BAC Information

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BAC

Clone NameMSMg01-410N17
Chromosome11 (Build37)
Map Location 54,270,474 - 54,409,873
singlet/doubletdoublet
Overlap geneFnip1, Rapgef6
Upstream geneShroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411
Downstream geneCdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410N17.T7 (MSMg01no410_n17.b1)MSMg01-410N17.TJ (MSMg01no410_n17.g1)
ACCAG508008AG508009
length750758
length of high quality
(start - end)		514 (72 - 585)467 (81 - 547)
definitionCHROMAT_FILE: MSMg01no410_n17.b1 PHD_FILE: MSMg01no410_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:43 2005CHROMAT_FILE: MSMg01no410_n17.g1 PHD_FILE: MSMg01no410_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,270,474 - 54,270,987)(54,409,446 - 54,409,873)
sequence
NNNTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTATAATTGCCGAACTTCTGAAGAGCTTTGTTGTAGCTATG
GTTGCCTGAGCCCTGTGCTCAGGGCAGCTCTTACTGAGTGGAAAGCACTA
TACATAAAGTGACCCTAGAAATTCCACTATTATGAGGCATGGTGCCCAGG
TGGTGGCACTATTTTGGAGGTGGGGCCTAGCTAGAGGACACAGGCAAGAA
GGGTGTGCTCTCCGGTGGTATCTTCTGCCTCTCACCACCCTTTCCTCTCC
CTTTCCCCCTCTCCTCCCCTACTTTTCTTTTTTTCTCCTTTACCTCTTTC
CTAGTCTCTTCTCTTCCTTGTTCTTCCCTTTTCCTCCCCCTTCTCTCTTT
CCTTCTCTTTCTCCCATTTTCATTCTCCTCTCTTCTCTCCTTTTTACTTA
TCTTTTGTCTGTTTTTTATTTTTCTGATTTCATGAAATAAAGAACCACTT
CTTTACTCTTGCACAAACATTAACAGCAAACACTAAACATTGTCGGCATT
CTTGGTCTGCGCCCAGCTGCCAGGTAGGGCTTAATTTACAAGGATGTTTA
GATTGATTTCTTTTTTTCATACCCTTTGTGGNAGAAGAGATGAAAGAAAG
TACCATGTTACTCCGAGAAATCCCACTTTCAGCGAAACTAATAAGTGATG
CTACCTACCAAATTGTTCACACAGATCGATGCAGCCCTTTGCATAATTGG


NCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACCTTCTCTTCTCCCAAGC
AGTTTCACAGCTCTGCAATACAGCTTCTGATTCCAGGCATTAGTAAGAAA
GCACCGATGATCTAAGTCTGCCCTTTCTGGATAACATGTATATACGATGC
AACACAAAAACCACTACATCTTTTGTGAACGCAAGAGTCTGTCAGTGTCT
TAATTCCTGCTGTCCTTGCCTGCTTCACAGCAGCTCCCTAAGGAGAAGCT
CCTATTGATTCTATGCCCTGCAGTAAGATGAAATATCTAATAAGAAGGAA
AGAGAGTGGGAGGAGAATAGAGCTAAAAGGATGACATCACCTGTGCAGAA
AGCCTTCACAAACTGCATTAGATCAATTGGCTACTGTATCTGCAGATGTA
GCCCAAGAGCAATTTACTGAACGAAAACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACGACCTTTTGTGA
GACACGCTGGCAAGCTAAATCCTGTAAGCACAAAACCTGGCTAATGTACC
CGNCTATTTTATAGTTTTTACCATTCCGGACATTANAATTCAGTTGTATC
TTGAAAAGCTCTTTTCCACCATATTTAAATTTAACACACAAATTTCCCTC
CGGCGAAAAAATTTGTTTTGCAAAAATACCCTTCATCCTTATACCCGGCG
CGTCGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_n17.b1 MSMg01no410_n17.b1 CHROMAT_FILE:
MSMg01no410_n17.b1 PHD_FILE: MSMg01no410_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:43 2005
         (514 letters)



>mm_chr11_54270274_54271187
          Length = 914

 Score =  940 bits (486), Expect = 0.0
 Identities = 507/514 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacttctgaagagctttgttgtagctatggttgcctgagccctgtgctcagggcagctct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 aacttctgaagagctttgttgtagctatggttgcctgagccctgtgctcagggcagcttt 260

                                                                       
Query: 61  tactgagtggaaagcactatacataaagtgaccctagaaattccactattatgaggcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactgagtggaaagcactatacataaagtgaccctagaaattccactattatgaggcatg 320

                                                                       
Query: 121 gtgcccaggtggtggcactattttggaggtggggcctagctagaggacacaggcaagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgcccaggtggtggcactattttggaggtggggcctagctagaggacacaggcaagaag 380

                                                                       
Query: 181 ggtgtgctctccggtggtatcttctgcctctcaccaccctttcctctccctttccccctc 240
           |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgcgctctccgttggtatcttctgcctctcaccaccctttcctctccctttccccctc 440

                                                                       
Query: 241 tcctcccctacttttctttttttctcctttacctctttcctagtctcttctcttccttgt 300
           |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccttccctacttttgtttttttctcctttacctctttcctagtctcttctcttccttgt 500

                                                                       
Query: 301 tcttcccttttcctcccccttctctctttccttctctttctcccattttcattctcctct 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttcccttttcctctcccttctctctttccttctctttctcccattttcattctcctct 560

                                                                       
Query: 361 cttctctcctttttacttatcttttgtctgttttttatttttctgatttcatgaaataaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 cttctctcctttttacttatcttttgtctgttttttatttttctgatttcatgaagtaaa 620

                                                                       
Query: 421 gaaccacttctttactcttgcacaaacattaacagcaaacactaaacattgtcggcattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaccacttctttactcttgcacaaacattaacagcaaacactaaacattgtcggcattc 680

                                             
Query: 481 ttggtctgcgcccagctgccaggtagggcttaat 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 681 ttggtctgcgcccagctgccaggtagggcttaat 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no410_n17.g1 MSMg01no410_n17.g1 CHROMAT_FILE:
MSMg01no410_n17.g1 PHD_FILE: MSMg01no410_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:43 2005
         (467 letters)



>mm_chr11_54409278_54410144
          Length = 867

 Score =  828 bits (428), Expect = 0.0
 Identities = 428/428 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccttctcttctcccaagcagtttcacagctctgcaatacagcttctgattccaggcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aaccttctcttctcccaagcagtttcacagctctgcaatacagcttctgattccaggcat 537

                                                                       
Query: 61  tagtaagaaagcaccgatgatctaagtctgccctttctggataacatgtatatacgatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tagtaagaaagcaccgatgatctaagtctgccctttctggataacatgtatatacgatgc 477

                                                                       
Query: 121 aacacaaaaaccactacatcttttgtgaacgcaagagtctgtcagtgtcttaattcctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aacacaaaaaccactacatcttttgtgaacgcaagagtctgtcagtgtcttaattcctgc 417

                                                                       
Query: 181 tgtccttgcctgcttcacagcagctccctaaggagaagctcctattgattctatgccctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tgtccttgcctgcttcacagcagctccctaaggagaagctcctattgattctatgccctg 357

                                                                       
Query: 241 cagtaagatgaaatatctaataagaaggaaagagagtgggaggagaatagagctaaaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cagtaagatgaaatatctaataagaaggaaagagagtgggaggagaatagagctaaaagg 297

                                                                       
Query: 301 atgacatcacctgtgcagaaagccttcacaaactgcattagatcaattggctactgtatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 atgacatcacctgtgcagaaagccttcacaaactgcattagatcaattggctactgtatc 237

                                                                       
Query: 361 tgcagatgtagcccaagagcaatttactgaacgaaaacacacacacacacacacacacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tgcagatgtagcccaagagcaatttactgaacgaaaacacacacacacacacacacacac 177

                   
Query: 421 acacacac 428
           ||||||||
Sbjct: 176 acacacac 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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