BAC Information

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BAC

Clone NameMSMg01-410O19
Chromosome11 (Build37)
Map Location 73,506,247 - 73,506,773
singlet/doubletsinglet
Overlap gene1700012C15Rik
Upstream geneAnkfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1
Downstream geneOlfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410O19.T7 (MSMg01no410_o19.b1)MSMg01-410O19.TJ (MSMg01no410_o19.g1)
ACCAG508059AG508060
length757754
length of high quality
(start - end)		547 (50 - 596)524 (77 - 600)
definitionCHROMAT_FILE: MSMg01no410_o19.b1 PHD_FILE: MSMg01no410_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:48 2005CHROMAT_FILE: MSMg01no410_o19.g1 PHD_FILE: MSMg01no410_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:48 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGAACTCTTCCGCTGGGGAACAGGGTACCCGTAAGTATAGC
TTTACAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTC
TATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTAAGTCTGGTCTTGAA
CTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGC
TTTACAAGGTATGTTTGGCCTTGAACTTTCTCCAGTGTTAGGAGCCTTTT
TGTTCCTTTTCACATGTTATCAAGTGGTTAAGGCAGGGCTGAAAATTCTG
GATGAAATTCAGGGCAATCTATCAGAAGTAAAGTGGGGAGAGAGAGTAGG
AGCAAAGAGGAAATATGGTGCACAGAATAAGTAAACAGGCCTTTCCACGG
GTCTTGAACCCAAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAG
ATTAGAAGGAAGGAAAAGAAAAAAGAAAAGAAAAAAGATCAATTAGCGGA
GGTCTCTAGGAGAAGGAGCCTATACTCATCACTAGATGAGCTCAAGGAGC
CAGCTCTTAGTAGCTCTGAATCAGATGAAGAATTCTCCTCTGAAGAAACA
GACTTGGAGGAAGAAGCACCTCGTTATGAGAGAAAAAGTTACACGCCGAT
AAAAAGCTAGCTAACTCTTTACGGAAAAGCCTAAGTGGCTTGGGGAATGC
CCCTTGN

NCCGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCATGGAGAGAAGCTCAAAGCAA
TTCCTCTTAAATCATGAGCAGTAGAAGGTTGTTCATTTTCTCCATAGATA
TTCAATATATATTTTTGAAATAATATCTAGAGCAATAAGACATTTAATGA
GCTTTAGAGGATATGCATAAATAGATACTATAAAAGTATCCTTATTATTT
TGATAATAAATATATATATAAAATTTGACAGGATGTTTCTACATTTATAG
TCAGGTTCCTTTAAAAAGCATTTTCATCTATAGGGATGTAAAACAAACAA
ACAAACAAACAATATATATATATATATATATATATATATACCTTATAAGG
TATATAAAATCAACACATATTATACATATCATATAAATATATACACATAT
GTATTTTGTATAATCGTAAGTAAATATAAAACAATATTTCTATTTGCTTT
ACCATAACTAACATTTTTTATTATTTGTCAAAAATCTTGCCTCTTTTTCT
GTATTGATCTTTTGCCTGCTCCCAGTTTAGAAACACTTCCCCTTTCCTAT
TTTATATTGTTTCTATTTTTCCCCATAACTATCCATATAATTCTCATAAA
CTAATGANGTTTATGAAAATCAGCATTAGTTTCCCACTACATATGATCAG
TATTATGGGTTTTCCAATGCAGAGATTTCTTTGCTTAAAAATAAATATCC
CCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_o19.g1 MSMg01no410_o19.g1 CHROMAT_FILE:
MSMg01no410_o19.g1 PHD_FILE: MSMg01no410_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:48 2005
         (524 letters)



>mm_chr11_73506050_73506973
          Length = 924

 Score =  965 bits (499), Expect = 0.0
 Identities = 520/527 (98%), Gaps = 3/527 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcatggagagaagctcaaagcaattcctcttaaatcatgagcagtagaaggttgttcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tgcatggagagaagctcaaagcaattcctcttaaatcatgagcagtagaaggttgttcat 257

                                                                       
Query: 61  tttctccatagatattcaatatatatttttgaaataatatctagagcaataagacattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tttctccatagatattcaatatatatttttgaaataatatctagagcaataagacattta 317

                                                                       
Query: 121 atgagctttagaggatatgcataaatagatactataaaagtatccttattattttgataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atgagctttagaggatatgcataaatagatactataaaagtatccttattattttgataa 377

                                                                       
Query: 181 taaatatatatataaaatttgacaggatgtttct-acatttatagtcaggttcctttaaa 239
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 378 taaatatatatataaaatttgacaggatgtttctcacatttatagtcaggttcctttaaa 437

                                                                       
Query: 240 aagcattttcatctatagggatgtaaaacaaacaaacaa-acaaaca-atatatatatat 297
           ||||||||||||||||||||||||||||||||||||||| | | | | ||||||| ||||
Sbjct: 438 aagcattttcatctatagggatgtaaaacaaacaaacaatatatatatatatatacatat 497

                                                                       
Query: 298 atatatatatatatataccttataaggtatataaaatcaacacatattatacatatcata 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atatatatatatatataccttataaggtatataaaatcaacacatattatacatatcata 557

                                                                       
Query: 358 taaatatatacacatatgtattttgtataatcgtaagtaaatataaaacaatatttctat 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 taaatatatacacatatgtattttgtataatcgtaagtaaatataaaacaatatttctat 617

                                                                       
Query: 418 ttgctttaccataactaacattttttattatttgtcaaaaatcttgcctctttttctgta 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ttgctttaccataactaacattttttattatttgtcaaaaatcttgcctctttttctgta 677

                                                          
Query: 478 ttgatcttttgcctgctcccagtttagaaacacttcccctttcctat 524
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttgatcttttgcctgctcccagtttagaaacacttcccctttcctat 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 86
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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