BAC Information

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BAC

Clone NameMSMg01-411J08
Chromosome11 (Build37)
Map Location 12,902,203 - 12,902,765
singlet/doubletsinglet
Overlap genenone
Upstream geneGrb10, Cobl, LOC627244
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411J08.T7 (MSMg01no411_j08.b1)MSMg01-411J08.TJ (MSMg01no411_j08.g1)
ACCAG508559AG508560
length754755
length of high quality
(start - end)
565 (48 - 612)563 (77 - 639)
definitionCHROMAT_FILE: MSMg01no411_j08.b1 PHD_FILE: MSMg01no411_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:41 2005CHROMAT_FILE: MSMg01no411_j08.g1 PHD_FILE: MSMg01no411_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTTACCTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCTACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGGTGGTGGTC
TTTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAGTCTC
ATGAGGTCCCATTTGTCAATCCTTGATCTTACAGCACAAGCCATTGCTAT
TCTATTCAGGAATTTTCCCCGTGTGCTCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTG
ATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCGATTCG
CTTTCTTCTACAAGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAA
TGCTATCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAG
TGACCATAGATGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTG
GNCTACTTGTCTGTCTCTATACCAGTACCATGCAGNTTTTATCAAAATTG
CTATGTAATAAAGCTTTAAGCCAGGTATGGNGATTCCACCAGAGGTGCTT
TTGTCCTTGAGAAGATTTTTTGCTATCCTACGGTTTTTGTTATTCCGATG
AATN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAAAAAGACATTCAAAGCCCA
AACCAAAGTGTTCATCCTGGAACAGTCATAAATGGGTCACTGTTCCTTCT
TGTTGTGCATTTATATTATGAAACCAATGTAGTACATGAAGAGTATCATC
TGAAACTGGCAAACAATGCAGAAGAGATTGGTAATGAGAATGAGAGCATG
TGAATGCATCCCACCCACATGTATGATTGCTATGCCTGTGTTTGTGGAGT
GAGGTGTGTACCCAGTTATGATTTATACAGATTAACCAAAGCTGTTCAAA
GCATCTGACCACAGAATATGCTAAGGCTTAGAGAGATGAACCCTAGATTC
TTGGAAGAATATTATGATTATTGGAAGTTAAGGATCAGCTGAGATCACAT
ATTCCCTAGAAACTCTTTCCACATCAAAAACACTATTTACAAGAGGAAAT
GTTTCATGCCTGTGAGTATCTAGTGCATAGGGTCATGAAGGTGCATAAGT
GCTGGGAGTTTCAGGGCTTGATGGCCCTTCTGAATTTTCTTTTGGATGCC
AACTTGTGATTAGAAAATGTTAATGGAAGTTAGCAATATTATGGTTTCTG
AAAAGCCATTGCTTGCAGATGGCACAAGTCTACGCTGTTTATAAGAAACT
GTGAGCTAGTTTTATTTCTTTTGTTTCAAAATACATTTGTTTAAAAATAA
TTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_j08.g1 MSMg01no411_j08.g1 CHROMAT_FILE:
MSMg01no411_j08.g1 PHD_FILE: MSMg01no411_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:41 2005
         (563 letters)



>mm_chr11_12902003_12902965
          Length = 963

 Score = 1027 bits (531), Expect = 0.0
 Identities = 555/563 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaaaaaagacattcaaagcccaaaccaaagtgttcatcctggaacagtcataaatggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 aagaaaaaagacattcaaagcccaaaccaaagtgttcatcctggaacagtcataaatggg 704

                                                                       
Query: 61  tcactgttccttcttgttgtgcatttatattatgaaaccaatgtagtacatgaagagtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tcactgttccttcttgttgtgcatttatattatgaaaccaatgtagtacatgaagagtat 644

                                                                       
Query: 121 catctgaaactggcaaacaatgcagaagagattggtaatgagaatgagagcatgtgaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 catctgaaactggcaaacaatgcagaagagattggtaatgagaatgagagcatgtgaatg 584

                                                                       
Query: 181 catcccacccacatgtatgattgctatgcctgtgtttgtggagtgaggtgtgtacccagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 catcccacccacatgtatgattgctatgcctgtgtttgtggagtgaggtgtgtacccagt 524

                                                                       
Query: 241 tatgatttatacagattaaccaaagctgttcaaagcatctgaccacagaatatgctaagg 300
           |||||   |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tatgaaacatacggattaaccaaagctgttcaaagcatctgaccacagaatatgctaagg 464

                                                                       
Query: 301 cttagagagatgaaccctagattcttggaagaatattatgattattggaagttaaggatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 cttagagagatgaaccctagattcttggaagaatattatgattattggaagttaaggatc 404

                                                                       
Query: 361 agctgagatcacatattccctagaaactctttccacatcaaaaacactatttacaagagg 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 403 agctgagatcacatattccctagaaactctttccacatcagaaacactatttacaagagg 344

                                                                       
Query: 421 aaatgtttcatgcctgtgagtatctagtgcatagggtcatgaaggtgcataagtgctggg 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aaatgtttcattcctgtgagtatctagtgcatagggtcatgaaggtgcataagtgctggg 284

                                                                       
Query: 481 agtttcagggcttgatggcccttctgaattttcttttggatgccaacttgtgattagaaa 540
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 agtttcagggcttggtggcccttctgaattttcttttggatgccaacttgtgattagaaa 224

                                  
Query: 541 atgttaatggaagttagcaatat 563
           ||| |||||||||||||||||||
Sbjct: 223 atgctaatggaagttagcaatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)