Query= MSMg01no411_k09.b1 MSMg01no411_k09.b1 CHROMAT_FILE:
MSMg01no411_k09.b1 PHD_FILE: MSMg01no411_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:46 2005
(489 letters)
>mm_chr11_47758402_47759289
Length = 888
Score = 803 bits (415), Expect = 0.0
Identities = 454/475 (95%), Gaps = 17/475 (3%)
Strand = Plus / Minus
Query: 23 tgacatgagtagatattctctacagaatcacctagttaatgcattcagtaattctgcaat 82
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 688 tgacatgagtagatattctctacagaatcacctagttaaagcattcagtaattctgcaat 629
Query: 83 ctgatttgggtgtttttaaacccagtcagcacacgatgtattatggtaagataaaaacca 142
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctgatttgggtgtttttaaac---gtcagcacacgatgtattatggtaagataaaaacca 572
Query: 143 aggggcttgtgtagaaaaacaaggctccagataccacaatcaaaagttataaaatgtcat 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aggggcttgtgtagaaaaacaaggctccagataccacaatcaaaagttataaaatgtcat 512
Query: 203 gtgaaataaaacataggaatactataaaatggcaacacgactttatccattggtatttca 262
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 511 gtgaaataaaacataggaatactataaaatggcaacacaactttatccattggtatttca 452
Query: 263 gtaaatatgg----tttttcacccttaaaaaaaaaagagctgcagaatgttttgggagat 318
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gtaaatatggcaaa----tcacccttaaaaaaaaaagagctgcagaatgttttgggagat 396
Query: 319 gggcaagtggagaggtcctgtttgggtgtctctggaagtgatgccaaagggttaccaatc 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gggcaagtggagaggtcctgtttgggtgtctctggaagtgatgccaaagggttaccaatc 336
Query: 379 ttttctctcctatgcagtcattt----ctctgggttatgcttccctgccttctaacaaag 434
|||||||||||||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct: 335 ttttctctcctatgtagtca--tcaggctctgggttatgcttccctgccttctaacaaag 278
Query: 435 gcctttgaagtcacttatagttgatacttatttcgtcagagatgaaaatttgatc 489
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gtctttgaagtcacttatagttgatacttatttcgtcagagatgaaaatttgatc 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 888
Length adjustment: 10
Effective length of query: 479
Effective length of database: 878
Effective search space: 420562
Effective search space used: 420562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_k09.g1 MSMg01no411_k09.g1 CHROMAT_FILE:
MSMg01no411_k09.g1 PHD_FILE: MSMg01no411_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:46 2005
(240 letters)
>mm_chr11_47605226_47605865
Length = 640
Score = 429 bits (222), Expect = e-125
Identities = 237/246 (96%), Gaps = 8/246 (3%)
Strand = Plus / Plus
Query: 1 acctttttggggggaactcaaaaagggcaatagcattagcctctattatttgcaggtctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 acctttttggggggaactcaaaaagggcaatagcattagcctctattatttgcaggtctc 252
Query: 61 ttagaatcttctgtccaact-t-------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 112
|||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 253 ttagaatcttctgtccaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 312
Query: 113 gtgtgtatcaagacagaatcttttatttgttaatgtataggagatcacaatttctatccc 172
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 313 gtgtgtatcaagacagaatcttttatttgttaatgtataggagaccacaatttctatccc 372
Query: 173 cattctcccttatttaatggaaaacactcacagtaattttaatctcatgagcaaatgtac 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cattctcccttatttaatggaaaacactcacagtaattttaatctcatgagcaaatgtac 432
Query: 233 ctcccc 238
||||||
Sbjct: 433 ctcccc 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
