CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGAAGTAGCTGTAGAGGGGCCAAGAATGTATCTCAGAGGGTCA
GGAACTGAACTAGTAAGCATGAAGTCTTGGGTTCCATTCCCAACATTACA
TGAAATGGGGCACATGACAGTGCATACTTGTAGTCCAGTCACCCTGGGGG
TGGAAGCAGACGGTTCACTCGTGTAATGTTATCCTCAGCTACATATTTAG
CTAGAGACCAGCCTGAGCTATATGAGACCTCTTGGGAACCAAGCTGACTC
AGAATTTTCTCAGAGGTCCCAATGAAAGTACCAAAGTAATCTAGATCTGT
GTCCTTGACTGTGGGTAACTTGGCAAGGTCCAATCTGGGGCTGGGGCCAG
AGCCACCAACGGAGTTAAGGTTTTAGTTTTTAGGAACTTGTCTCCCCCTA
CTCTTACCTGAAGAGACCAGAGTTTTCAGCCTCAAGACTGTGTGTGCTCA
GTCAGGTACACTTGAGACATTCTTTGTCCCCATTGTTTAATTGATTAGCT
TCCTTACTATGTCATCATATTTTATGATGGCTTTCTGGTGACTGTCCCAT
AACTTCCACCCCAAATAACATATAAGAGGCTGTATTTCTTAATAAACTAG
CTTACCATAAACCATCTGCTTTGTCCAAGATGGCTGGCCCCAACAATCCT
GGAATACTTGGTTTTTTTCCTCCCCAATTCTCCCGCCTTATAAATGAAAA
AGAACCCGAGGGTTTCGGTTACACACTTTTATTC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTATAACAAGATACATGGTAA
GTGCTTAAAGGGAGCACTTATTTATCAGACCAAATCATTTGTATCTGAAG
NCATGAGTGGGTGGGAGCCAACNTGAANGAGTGGTGGCCCCAGANATANN
NATAGGGGTGGTACGCGNCCNNCGGGGGGAAGGTCCGCATAATAATAAAN
AAGAAAATNNAGTTCTCTCCCCTTAAAAAAGGGGACTGTGGGAGAGGGTG
GGGGGAGGGAAGGTGAATATTTTCTCTTTGGTATTCGGNGCAACCCGCCT
AAAAAAAATTTGGGGGGAAAAAGGGGGATAAAAATTTGGTTCTTTAGGGC
TTGGGAAAATATGGGGGGAATAAATGGGGGGGGGGGGGAAGGGCGCCNCC
CCNNTTTNCCCCCCCTTTTCCCCCCTTCCCCCCTTTTCTCATTTCCCTTC
TCTTTCTTTTTCCCCTTTCCTCCCCTCTTTTTTCCCCTCTTTTTCCCCCC
TTTTCTTTTTCTTTCCTCACTTTTTACATCTTTTTTTTTTAACTCTTCTC
CTCCTTATTTTCCTCTTTTCCTCCCTTTTCCCCCTCTCTTCCCCTCCCCC
TCCCCCTCTTTTTTTTCCTTTTTTTCTCCTTCCCACCATTTACCTATTTT
ATATTTATTCTCTTCCTCTCCTTTCCCTTTTCTTTTACCTTCTCCTTTCC
TTATCCTTTTCCCTTCTTCTTCCCCCCCTTCTCCCTCTTTTTCCCTCCCT
CTACTTTTCCTCATCGG

Query= MSMg01no411_n21.b1 MSMg01no411_n21.b1 CHROMAT_FILE:
MSMg01no411_n21.b1 PHD_FILE: MSMg01no411_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:03 2005
         (564 letters)



>mm_chr11_17043549_17044512
          Length = 964

 Score =  903 bits (467), Expect = 0.0
 Identities = 515/531 (96%), Gaps = 2/531 (0%)
 Strand = Plus / Minus

                                                                       
Query: 35  agaatgtatctcagagggtcaggaactgaactagtaagcatgaagtcttgggttccattc 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 agaatgtatctcagagggtcaggaactgaactagtaagcatgaagtcttgggttccattc 905

                                                                       
Query: 95  ccaacattacatgaaatggggcacatgacagtgcatacttgtagtccagtcaccctgggg 154
           ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 ccaacatcacataaaatggggcacatgacagtgcatacttgtagtccagtcaccctgggg 845

                                                                       
Query: 155 gtggaagcagacggttcactcgtgtaatgttatcctcagctacatatttagctagagacc 214
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 844 gtggaagcagacggatcactcgtgtaatgttatcctcagctacatatttagctagaggcc 785

                                                                       
Query: 215 agcctgagctatatgagacctcttgggaaccaagctgactcagaattttctcagaggtcc 274
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 784 agcctgggctatatgagacctcttgggaaccaggctgactcagaattttctcagaggtcc 725

                                                                       
Query: 275 caatgaaagtaccaaagtaatctagatctgtgtccttgactgtgggta-acttggcaagg 333
           | ||||||||||||||| || |||||||||||||||||||  |||||| |||||||||||
Sbjct: 724 cgatgaaagtaccaaagaaacctagatctgtgtccttgaccatgggtagacttggcaagg 665

                                                                       
Query: 334 tccaatctggggctggggccagagccaccaacggagttaaggttttagtttttaggaact 393
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 664 tccaatctggggctggggccagagccaccaacggagttaaggttttagttcttaggaact 605

                                                                       
Query: 394 tgtctccccctactcttacctgaagagaccagagttttcagcctcaagactgtgtgtgct 453
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 604 tgtctccccctactcttacctgaagagaccagagttttcagcctca-gactgtgtgtgct 546

                                                                       
Query: 454 cagtcaggtacacttgagacattctttgtccccattgtttaattgattagcttccttact 513
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 545 cagtcaggtacacttgagacattctttgtccccattgtttaattgattaacttccttact 486

                                                              
Query: 514 atgtcatcatattttatgatggctttctggtgactgtcccataacttccac 564
           |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 485 atgtcatcatattttatgatggttttctggtgactgtcccataacttccac 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)