Query= MSMg01no412_d13.b1 MSMg01no412_d13.b1 CHROMAT_FILE:
MSMg01no412_d13.b1 PHD_FILE: MSMg01no412_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:31 2005
(275 letters)
>mm_chr11_9622536_9623209
Length = 674
Score = 493 bits (255), Expect = e-144
Identities = 267/271 (98%), Gaps = 1/271 (0%)
Strand = Plus / Plus
Query: 5 aaagagttaaaccagaatttgtagcaatttctcagaagagccttgtacaggtaaatgttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aaagagttaaaccagaatttgtagcaatttctcagaagagccttgtacaggtaaatgttc 264
Query: 65 actatatcctcatctttgtactgctttcaaataatgaagcaattcaaattgtttcccatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actatatcctcatctttgtactgctttcaaataatgaagcaattcaaattgtttcccatg 324
Query: 125 catatgcattagaacattcaattacatttcaattatgtactcgactgcatttaagatact 184
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 325 catatgcattagaacattcaattacatttcaattatgtactcgactgcatttgagatact 384
Query: 185 tccaatctgtactttgatatcagttcctttttgtacaaaaaaaaatctttagcaattctt 244
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 cccaatctgtactgtgatatcagttcctttttgta-aaaaaaaaatctttagcaattctt 443
Query: 245 ttaaagatttattttgaattatctatatgtc 275
|||||||||||||||||||||||||||||||
Sbjct: 444 ttaaagatttattttgaattatctatatgtc 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 674
Length adjustment: 9
Effective length of query: 266
Effective length of database: 665
Effective search space: 176890
Effective search space used: 176890
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no412_d13.g1 MSMg01no412_d13.g1 CHROMAT_FILE:
MSMg01no412_d13.g1 PHD_FILE: MSMg01no412_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:31 2005
(461 letters)
>mm_chr11_9718204_9719070
Length = 867
Score = 861 bits (445), Expect = 0.0
Identities = 459/467 (98%), Gaps = 6/467 (1%)
Strand = Plus / Minus
Query: 1 tgaattgtgatatattaccctaagtagctttgttgaatattatcttgctctcccataatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tgaattgtgatatattaccctaagtagctttgttgaatattatcttgctctcccataatt 608
Query: 61 catgtgaagttgttgaaaggaaaaacgtcatgagcaatagggaaaatctcttaacagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 catgtgaagttgttgaaaggaaaaacgtcatgagcaatagggaaaatctcttaacagaaa 548
Query: 121 gggctgtgacccaggcagttcttcatccagctgtattgttattaataaatacgagatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gggctgtgacccaggcagttcttcatccagctgtattgttattaataaatacgagatcag 488
Query: 181 gcccaatacaagcttactgaatacaagttactggctaaacataagagagcaaacccttgg 240
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 487 gcccagtacaagcttactgaatacaagttactggctaaacgtaagagagcaaacccttgg 428
Query: 241 cagcttctatgcagagcaagccgtggaagttctgctctaggtgagctcagggacaggaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cagcttctatgcagagcaagccgtggaagttctgctctaggtgagctcagggacaggaga 368
Query: 301 aatacattcctaagtaagaagc------ctgtaaaattaactgaaaataatctcatttgt 354
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 367 aatacattcctaagtaagaagccttgatctgtaaaattaactgaaaataatctcatttgt 308
Query: 355 gtagaacataaaattttaatagtgaatacctagtaccaaaaccatgtctctgtaaaattt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtagaacataaaattttaatagtgaatacctagtaccaaaaccatgtctctgtaaaattt 248
Query: 415 aatataataaactttcatctttggtagaaggagatgagaaaacccag 461
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aatataataaactttcatctttggtagaaggagatgagaaaacccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 867
Length adjustment: 10
Effective length of query: 451
Effective length of database: 857
Effective search space: 386507
Effective search space used: 386507
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
