Query= MSMg01no412_e04.b1 MSMg01no412_e04.b1 CHROMAT_FILE:
MSMg01no412_e04.b1 PHD_FILE: MSMg01no412_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:34 2005
(477 letters)
>mm_chr11_41776045_41776921
Length = 877
Score = 857 bits (443), Expect = 0.0
Identities = 466/475 (98%), Gaps = 4/475 (0%)
Strand = Plus / Minus
Query: 5 gaattcctcaccatttccgtcattgcttgcttcttcgtagttcttaaatcatcttattta 64
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaattcctcaccagttaggtcattgcttgcttcttcgtagttcttaaatcatcttattta 618
Query: 65 ctctcagtacctctgtgcgatccctggagaaaaatattttccgggtggtagattagtgta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctctcagtacctctgtgcgatccctggagaaaaatattttccgggtggtagattagtgta 558
Query: 125 gcccgtagtgagtaccttcaattcacttacgacactatcatgaatcctgatctaagaatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gcccgtagtgagtaccttcaattcacttacgacactatcatgaatcctgatctaagaatc 498
Query: 185 ctccttccaaacttcatctcttcttgatggttcattatctggtggtgctg--ccactgtg 242
|||||||||||||||||||||||||||||||||||||||||||| || | |||| |||
Sbjct: 497 ctccttccaaacttcatctcttcttgatggttcattatctggtg--gcagcaccaccgtg 440
Query: 243 gcccccgtgaggcaggcatgaacactcagagtcatgtctctgcctcccacacttaatgat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gcccccgtgaggcaggcatgaacactcagagtcatgtctctgcctcccacacttaatgat 380
Query: 303 tcatgaaggcacttatgcctctgaaatctcttgtgtaactgtcctcctttctgttgccgc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcatgaaggcacttatgcctctgaaatctcttgtgtaactgtcctcctttctgttgccgc 320
Query: 363 tgccactgtcctagttcacaaatgtgtctgttcttatctggactatgtcggctgcttatt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgccactgtcctagttcacaaatgtgtctgttcttatctggactatgtcggctgcttatt 260
Query: 423 aaggcatgtccctgttgtcagcctctctccgcgaaggtgtgtgccttgtaaatta 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaggcatgtccctgttgtcagcctctctccgcgaaggtgtgtgccttgtaaatta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_e04.g1 MSMg01no412_e04.g1 CHROMAT_FILE:
MSMg01no412_e04.g1 PHD_FILE: MSMg01no412_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:34 2005
(466 letters)
>mm_chr11_41601382_41602248
Length = 867
Score = 886 bits (458), Expect = 0.0
Identities = 464/466 (99%), Gaps = 1/466 (0%)
Strand = Plus / Plus
Query: 1 tccatgctcaagtgcttaggacagttgggtggtagagcagaggacctcagcttgaaaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccatgctcaagtgcttaggacagttgggtggtagagcagaggacctcagcttgaaaacc 260
Query: 61 gagaataggaagggaaattggtatgaaagctctttgcagcaaaacttgaattatgtaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaataggaagggaaattggtatgaaagctctttgcagcaaaacttgaattatgtaata 320
Query: 121 atgctgacaccaaatttcttctttcatcattttgtttgactccggtcctcctgccaaagt 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 atgctgacaccaaatttcttctttcatcgttttgtttgactccggtcctcctgccaaagt 380
Query: 181 cttcccaaggtcagagctcgcatttctttgcaatcagaaatgtgcttgcaaagcttctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcccaaggtcagagctcgcatttctttgcaatcagaaatgtgcttgcaaagcttctta 440
Query: 241 aagctctaggaatccagggg-ttagagaacaaacctttgctacaaacttcaacaattgca 299
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagctctaggaatccagggggttagagaacaaacctttgctacaaacttcaacaattgca 500
Query: 300 cagtagaatgcagaaaaacaacagactttttagtaatcctccggctttatcctatgatag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtagaatgcagaaaaacaacagactttttagtaatcctccggctttatcctatgatag 560
Query: 360 cttagtttttttgtaatggctgcataatgatcttcaaggaaggttgctggcattttttag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttagtttttttgtaatggctgcataatgatcttcaaggaaggttgctggcattttttag 620
Query: 420 caaactggggttttattccagcattttcttttcataatacatataa 465
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaactggggttttattccagcattttcttttcataatacatataa 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 867
Length adjustment: 10
Effective length of query: 456
Effective length of database: 857
Effective search space: 390792
Effective search space used: 390792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
