NCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATTACTCTTTTTTCACAATATATTTAGCAAGTTAACCAACAA
GATCTCTATAACACAGTTTCTGCTGTGAAAATCTAATTGCTCCTGGACAA
TCTACAGATCTATCTATAGAATACAATAGTGATATGGTAATGATTGATAA
CTGACTGTTATCTTTTGTGCTTCTATTATAAACAGAATTTTGCTGAACTC
TGTATAATATAAATACTTACATTAATTCAACTGAATGCCCTTTCTGGTCT
CATGGGGACATTTTCTTGTTAATAAATAGAACTAAACAAAAGAAAATGTA
AGATGGAACCATATTGTAGTCAGAATGAGCCCATGTGTTTATTACCCTTA
TTTATTTATGTAAATGTATGCAGTGTGTGAGAGAGACTATACTCACACTC
ATGTCATGATACACAGGTGTGCCTCTGAGGATAACTTATGGAAGTTTATT
CTTTCCTTACATTAGGTGGGTTCTGGGAATTAAACTAAGGTTTTTAGGCT
TATTGGCAAACATCTTTTATCTGACAAGAAATCAATCTCACCTACCTGAG
TCCATGCATTAATCGTTTTGGTCTTGAGAAGATGATGATTTCATTCAAAT
TACTACTTCTACTACTACTTCTACTACNANATTATTACTATTATTCATAT
TATTACCATTATTATTGCGGTGGAAAGGTGGGGTACGGGCGCCCGTGTTT
CTCCGCCCCCTTTCCAG

CCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCATCACAACAGTTTAGACAAAT
GAGATTGGGAGGCAGATAGATCATGAAGGCCCCTTCTTTATGAATGAATT
GAGTTGTTTTACATGAAGCTTCATGGCAAAATGATATTCCTTTGCTCTCC
TCCATCAACTATGTGATAGGACAGCAGTTTTCCCAATTGGAGGACACAAA
ATCAAAGGACCTGTCTTGGAAGAAGAAAGCGATTCTGGAGATTCACATCT
TGAAGGGGCATTGAACTTGATCATCTCAGTGTCTGAACAGGAAAAAATAA
ATATCTACTATTTGTAAATCACTCGGTCACGATGGTTAATTTCAGTAGCA
GCCAAGCTGACACCCATTCTCAAAATAAATAAATAAATAAATAAATAAAT
AAATAAATAAATAAATAAACTGAGAAAATGGAAAACTTAAAATACAAACA
TCTGTCAAAATTTAGTTGCACATTGGAGCTGAGAAAGATGATTTTAATGT
GTAATGTTAGGTGGACCGAAGGATAAAAATACAGAACAAAGGCCACAAGT
TTGTGTGTGTGTGTGTGTGTGTTTCTCATTNNNCTTTNCCCTATACCCAT
ATTTTTTCCCCTTTTCTCTTCTCTTTTTCTTATTCCTTTTCTTCTTCTTT
CACCCCCACCTTTCTTTCTATACCACCTATTCCCTCTTTTCTTCTTCTTC
TCTCCTTTTTTTTTT

Query= MSMg01no412_f03.b1 MSMg01no412_f03.b1 CHROMAT_FILE:
MSMg01no412_f03.b1 PHD_FILE: MSMg01no412_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:38 2005
         (568 letters)



>mm_chr11_38547647_38548615
          Length = 969

 Score = 1069 bits (553), Expect = 0.0
 Identities = 562/565 (99%), Gaps = 1/565 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccattactcttttttcacaatatatttagcaagttaaccaacaagatctctataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gaattccattactcttttttcacaatatatttagcaagttaaccaacaagatctctataa 710

                                                                       
Query: 65  cacagtttctgctgtgaaaatctaattgctcctggacaatctacagatctatctatagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 cacagtttctgctgtgaaaatctaattgctcctggacaatctacagatctatctatagaa 650

                                                                       
Query: 125 tacaatagtgatatggtaatgattgataactgactgttatcttttgtgcttctattataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tacaatagtgatatggtaatgattgataactgactgttatcttttgtgcttctattataa 590

                                                                       
Query: 185 acagaattttgctgaactctgtataatataaatacttacattaattcaactgaatgccct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 acagaattttgctgaactctgtataatataaatacttacattaattcaactgaatgccct 530

                                                                       
Query: 245 ttctggtctcatggggacattttcttgttaataaatagaactaaacaaaagaaaatgtaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 529 ttctggtctcatggggacattttcttgttaataaatagaactaaacaaaagcaaatgtaa 470

                                                                       
Query: 305 gatggaaccatattgtagtcagaatgagcccatgtgtttattacccttatttatttatgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gatggaaccatattgtagtcagaatgagcccatgtgtttattacccttatttatttatgt 410

                                                                       
Query: 365 aaatgtatgcagtgtgtgagagagactatactcacactcatgtcatgatacacaggtgtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aaatgtatgcagtgtgtgagagagactatactcacactcatgtcatgatacacaggtgtg 350

                                                                       
Query: 425 cctctgaggataacttatggaagtttattctttccttacattaggtgggttctgggaatt 484
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cctccgaggataacttatggaagtttattctttccttacattaggtgggttctgggaatt 290

                                                                       
Query: 485 aaactaa-ggtttttaggcttattggcaaacatcttttatctgacaagaaatcaatctca 543
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aaactaaaggtttttaggcttattggcaaacatcttttatctgacaagaaatcaatctca 230

                                    
Query: 544 cctacctgagtccatgcattaatcg 568
           |||||||||||||||||||||||||
Sbjct: 229 cctacctgagtccatgcattaatcg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 969
Length adjustment: 10
Effective length of query: 558
Effective length of database: 959
Effective search space:   535122
Effective search space used:   535122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)