BAC Information

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BAC

Clone NameMSMg01-412N12
Chromosome11 (Build37)
Map Location 12,205,357 - 12,205,756
singlet/doubletsinglet
Overlap geneCobl
Upstream geneZpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc, Grb10
Downstream geneLOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412N12.T7 (MSMg01no412_n12.b1)MSMg01-412N12.TJ (MSMg01no412_n12.g1)
ACCAG509518AG509519
length742749
length of high quality
(start - end)
534 (52 - 585)402 (76 - 477)
definitionCHROMAT_FILE: MSMg01no412_n12.b1 PHD_FILE: MSMg01no412_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:21 2005CHROMAT_FILE: MSMg01no412_n12.g1 PHD_FILE: MSMg01no412_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTTATGCTCTGTACCCCATTTTTTTTTTAAAGATT
TATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAG
AAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTG
CTGGGATTTGAACTCCTGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCC
GCTGAGCCATCTCACCAGCCCTGTACCCCATTTTTTAATGGGCTTATTTG
AATTTCTGGTGTTCAGCTTGTATTTTTTTTTCTAATTATGCACATGTTTA
TGTGTACAGGTTATGTATAAGTGTTAGTAAGCATCTTTGGTTTTGTTCCT
GTCTTATTCCAGTAACACAAAGGAAAAAAATGTACTAACTTTACTTAAGT
CAGAATGTAAGTGTCAATTTCCTGTCATAGCACTTAAGTTATAGGCTACC
AGGAGAAGAATAAACATTACTTGGGGTCTTTACCATTAATTCTGGGAAGC
AATTAATAAGTTTTTGTTGCATCCTGGAAAGTTGGGCCATGTTACTTGTA
ACTATGACTTTACCATTGTCTCCATTGGGAGGCTTAGCTTGTCTCACCGC
GATTTGCTTGATCTTCAAGCTGCCCCAAGTGGTGTATTTGCCCATCCTTT
CCGTGGACCCTTCCCTATTCTATCCTGTCTCTGAACCCCCTA
NNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGGGCAGGATGGGATCTGTCTAC
AGCCCTAGCCTGCCTGCTGGGTGTCATAAATATGTGGGCCTGCAGAAAGG
CAAGTTGGGGATATGGTTCAGGCCTTTACCTGGCTCTTCCACCCTTTGTA
GACCACTACACTGCAGATCTTGTAGGTGTCTTCTCTTCATGAAGTGAGCT
TACTGGGCTCACTCAGCAAATCCTATTCACTTGTCCCCACTAGGGAGGTG
ACACTGTGAGTGAGGATTTTCTGTCATAGAGTTGGCCTCTGAAATCGCTA
TGTGCCTTGGTGTGAGGGGGCTCTTCAGAGATGCCACAATGGTTTAAGGT
GACAAAACTAGCATTTTATTGATAGCTATCTAGTTGATTCTTCTTTAAAG
ATTTATTTATTTTTATTTTCATGTGCATTAGTAGTTTCCTGCATGTATGT
ATGTGTACCATGTGCATGCCTGGTGTCCATGGAAGTCAGAATAACTTTAT
AACATGGTCGCGAGCCCTGATGTAAGTGCTTGGAAAAGAACCTAGTGTCC
TCTGCCAGAACAACGAATGCCTTTTTACATCTTCCCCACAAATTTTTCGT
TGTTTTTTTATCTCCCCCCTACCTATAATTTTTTTCGCCCCGCCATTACC
CTTCTCCTCCTTTCCCCGCCTTACTTCCTCTTCCCTTACTTCCCCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_n12.g1 MSMg01no412_n12.g1 CHROMAT_FILE:
MSMg01no412_n12.g1 PHD_FILE: MSMg01no412_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:21 2005
         (402 letters)



>mm_chr11_12205157_12205958
          Length = 802

 Score =  688 bits (356), Expect = 0.0
 Identities = 389/400 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagggcaggatgggatctgtctacagccctagcctgcctgctgggtgtcataaatatgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 201 tcagggcaggatgggatctgtctacagccctagcctgcctgctgggtgtcataagtatga 260

                                                                       
Query: 61  gggcctgcagaaaggcaagttggggatatggttcaggcctttacctggctcttccaccct 120
           ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtctgcagaaaggcaagttgaggatatggttcaggcctttacctggctcttccaccct 320

                                                                       
Query: 121 ttgtagaccactacactgcagatcttgtaggtgtcttctcttcatgaagtgagcttactg 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtagaccactatactgcagatcttgtaggtgtcttctcttcatgaagtgagcttactg 380

                                                                       
Query: 181 ggctcactcagcaaatcctattcacttgtccccactagggaggtgacactgtgagtgagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctcactcagcaaatcctattcacttgtccccactagggaggtgacactgtgagtgagg 440

                                                                       
Query: 241 attttctgtcatagagttggcctctgaaatcgctatgtgccttggtgtgagggggctctt 300
           |||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaacagtcatagagttggcctctgaaatcgctatgtgccttggtgtgagggggctctt 500

                                                                       
Query: 301 cagagatgccacaatggtttaaggtgacaaaactagcattttattgatagctatctagtt 360
           |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 cagagatgccacaatggtttgaggtgacaaagctagcattttattgatagctatctagtt 560

                                                   
Query: 361 gattcttctttaaagatttatttatttttattttcatgtg 400
           |||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 gattcttctttaaagatttatttatttttactttcatgtg 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)