Query= MSMg01no413_h13.b1 MSMg01no413_h13.b1 CHROMAT_FILE:
MSMg01no413_h13.b1 PHD_FILE: MSMg01no413_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:10 2005
(560 letters)
>mm_chr11_46800367_46801326
Length = 960
Score = 1013 bits (524), Expect = 0.0
Identities = 551/560 (98%)
Strand = Plus / Plus
Query: 1 gccccatctttgaagggggttatttgattttctggagtccaccttcttgagttctttata 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 gccccatctttgaagggggttatttgattttctggagtccaccctcttgagttctttata 260
Query: 61 tatattggatattagtcccctatctgacttaagataggtaaagatcctttcccaatctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatattggatattagtcccctatctgacttaagataggtaaagatcctttcccaatctgt 320
Query: 121 tggtggcctttttgtcttattgacggtgtcttttgccttgcagaagctttgcagtttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtggcctttttgtcttattgacggtgtcttttgccttgcagaagctttgcagtttcat 380
Query: 181 gatgtcccatttgtcaatccttgatcttacagcacaagccattgctgttctattcaggaa 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggtcccatttgtcaatccttgatcttacagcacaagccattgctgttctattcaggaa 440
Query: 241 tttttcccctgtttccatattttcgaggcttttccccactttctcctccataagtttcag 300
|||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 441 tttttcccctgtgcccatattttcgaggctttcccccactttctcctctataagtttcag 500
Query: 301 tgtctctggttttatgtgaagttccttgatccacttagatttgaccttagtacaaggaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtctctggttttatgtgaagttccttgatccacttagatttgaccttagtacaaggaga 560
Query: 361 taggaatggatcgagaatttacatcattcttatctattagttaaggcctcctggttcacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggaatggatcgagaatttacatcattcttatctattagttaaggcctcctggttcacc 620
Query: 421 agaaaggctctgaggcagacgagtaaacttgaagctgaatgctagccctctagccacacc 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 agaaaggctctgaggcagacgagtaaacttgaagctgaatgctagccctatagccacacc 680
Query: 481 ctgggaagtaagtaccaggacgctaagaaagggagctgctgtgaaaatgtcctactgtca 540
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 ctgggaagtaagtaccaggatgctaagaaagggagctgctgtgaaaatgtcctactgtaa 740
Query: 541 aagatgatgtgacaatcagg 560
||||||||||||||||||||
Sbjct: 741 aagatgatgtgacaatcagg 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_h13.g1 MSMg01no413_h13.g1 CHROMAT_FILE:
MSMg01no413_h13.g1 PHD_FILE: MSMg01no413_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:10 2005
(436 letters)
>mm_chr11_47007250_47008084
Length = 835
Score = 762 bits (394), Expect = 0.0
Identities = 426/437 (97%), Gaps = 3/437 (0%)
Strand = Plus / Minus
Query: 1 aactctgaaaatctaattctaaagccttttttgttaagtccgtctcttacttaaggttct 60
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 635 aactctgaaaatctaattctaaagcc-tttttgttaagt-ggtctcttacttaaggttct 578
Query: 61 cattgttcttcttgtagtaaaatgcatgtttcctacacgatgtgccttgattagtcagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cattgttcttcttgtagtaaaatgcatgtttcctacacgatgtgccttgattagtcagga 518
Query: 121 ttaccaaacttgattactaaaatcatgtttattgttattgcttggttaggaatacagtct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttaccaaacttgattactaaaatcatgtttattgttattgcttggttaggaatacagtcg 458
Query: 181 gaatgcgaactgtccacctcaggctcatgtgtcacctctccactctccaactgccattgc 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gaatgtgaactgtccacctcaggctcatgtgtcacctctccactctccaactgccattgc 398
Query: 241 tttctgg-taatttgtttgggaagtggaggtttttgagaggaagtgtgttcctgccggag 299
||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 397 tttctggataaattgtttaggaagtggaggtttttgagaggaagtgtgttcctgggggag 338
Query: 300 ggccttcaggtttctagtcctgctctgcttcctgccactcagngcttcatgatccttaga 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 337 ggccttcaggtttctagtcctgctctgcttcctgccactcagtgcttcatgatccttaga 278
Query: 360 tatgtgagtgagcaggatcacacttatgcccaccgcttccagctcccatacctgctacac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tatgtgagtgagcaggatcacacttatgcccaccgcttccagctcccatacctgctacac 218
Query: 420 agtgagagactacacgg 436
|||||||||||||||||
Sbjct: 217 agtgagagactacacgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 835
Length adjustment: 9
Effective length of query: 427
Effective length of database: 826
Effective search space: 352702
Effective search space used: 352702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
