Query= MSMg01no415_b16.b1 MSMg01no415_b16.b1 CHROMAT_FILE:
MSMg01no415_b16.b1 PHD_FILE: MSMg01no415_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:23 2005
(312 letters)
>mm_chr11_75843000_75843711
Length = 712
Score = 538 bits (278), Expect = e-157
Identities = 299/306 (97%), Gaps = 3/306 (0%)
Strand = Plus / Plus
Query: 5 gaattcagggagtat-cggttttggcacacttcctcactgcaccggtgatcagaaagcag 63
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagggag-acacggttttggcacacttcctcactgcaccggtgatcagaaagcag 263
Query: 64 ctggcccaggatatcagagaagcttctgaaatccaggagtagcagtcatcaacctagaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctggcccaggatatcagagaagcttctgaaatccaggagtagcagtcatcaacctagaca 323
Query: 124 ctgggagtagctgattttacaacctgtctgagttctgtctgtccaccaaaaacaacctct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgggagtagctgattttacaacctgtctgagttctgtctgtccaccaaaaacaacctct 383
Query: 184 cccaactctttcagtcacagaccaaacagggcatcctcctgcctctgcagaattaccaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cccaactctttcagtcacagaccaaacagggcatcctcctgcctctgcagaattaccaag 443
Query: 244 caactctcaaagcatgagctgagcatcccatcttttcatccctccctccctccctccctc 303
|||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 444 caactctcaaagcatgagctgagcatcccatcagtcc-tccctccctccctccctccctc 502
Query: 304 cctccc 309
||||||
Sbjct: 503 cctccc 508
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space: 213009
Effective search space used: 213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_b16.g1 MSMg01no415_b16.g1 CHROMAT_FILE:
MSMg01no415_b16.g1 PHD_FILE: MSMg01no415_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:23 2005
(419 letters)
>mm_chr11_76054313_76055130
Length = 818
Score = 675 bits (349), Expect = 0.0
Identities = 401/419 (95%), Gaps = 3/419 (0%)
Strand = Plus / Minus
Query: 1 actatgtagaccaagctgaccttgaactcacagaaatctctctgcctctgtctcctaagt 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 530 actatgtagaccaagctgaccttgaactcacagaaatctatctgcctctgtctcctaagt 471
Query: 61 gctagtactaaaggtatgtgctaccaggcccatcttaagatgttcttaacctctgctaca 120
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 470 gctagtactaaaggtatgtgctaccaggcccatcttaagatgttctt-acctctgctata 412
Query: 121 cctagcctagaaggtctgcttgtttctcttagtaaagctgacaaatgataatgtttatat 180
|||| | |||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 411 cctatcgtagaaggtctgcttgtttctcttagtaaagctaacaaatgataatgtttatgt 352
Query: 181 cctgttagtttgcataaatgcgctatgtacaatactagtacacttgaagtgccagcatga 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 351 cctgttagtttgcataaatgcgctacgtacaatactagtacacttgaagtgccagcatga 292
Query: 241 ttattgttgagccaggaggatcatagtttgagagcaactggtctacacagtgagactcag 300
|| | |||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 291 ggatggctgagccaggaggatcatagtttgagagcaactgggctacacagtgaga--cag 234
Query: 301 tcctttaaagttgagcgctaagagcattgctcagcattagagctctcgtctaacacaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tcctttaaagttgagcgctaagagcattgctcagcattagagctctcgtctaacacaagt 174
Query: 361 ccttggaatccccagtactccaacgagtggaacttataacttattctcttttctttact 419
||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 173 ccttgaaatccccagtactccaacgagtggaacttataatttattctcttctctttact 115
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 818
Length adjustment: 9
Effective length of query: 410
Effective length of database: 809
Effective search space: 331690
Effective search space used: 331690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
