BAC Information

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BAC

Clone NameMSMg01-415F11
Chromosome11 (Build37)
Map Location 15,273,893 - 15,274,357
singlet/doubletsinglet
Overlap genenone
Upstream gene1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673, LOC432537
Downstream geneLOC665660, Vstm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415F11.T7 (MSMg01no415_f11.b1)MSMg01-415F11.TJ (MSMg01no415_f11.g1)
ACCAG511423AG511424
length749756
length of high quality
(start - end)
509 (61 - 569)466 (70 - 535)
definitionCHROMAT_FILE: MSMg01no415_f11.b1 PHD_FILE: MSMg01no415_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:42 2005CHROMAT_FILE: MSMg01no415_f11.g1 PHD_FILE: MSMg01no415_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGGCTCCCACTTAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAA
CATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCTGCAAAAATCAGGGAC
TAGACAAGGCTTCCCACTTTATCCCTACCTATTCAACACTGTACTTGAAG
TCCTAGCCAGAGCAATTTGACAACAAAAGGAGATCAAGGGGATACAAATT
AGAAAAGAAGTACTCAAAATATCACTTTTTACAAATGATATGATAGTATA
TATAAGTGACCCTAAAAATTCAACCACAGAACTCCTAAACCTGATTAACA
GCTTTGGTGAAGTAGCTGGATATAAAATTAACTCAAATAAGTCAATGGCC
TTTCTCTAAACAAAGGACAAACAGCCTGAGAAAGAAATTAGGGAAAAAAC
ACCCTTCTCAATAGTCGCAAATAATATAAAATACCTTGGCATGACTCTAA
CTAAGGAAGTGAAAGATCTATATGATAAGCACTTCATGCCTCTGAAGAGA
GAAATTAAAGAAAATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGAT
TGCNAGGATCAAAATTATAAAAATGGCTATCTTTGGCAAAAGCAATCTTA
CAGATTCAATGGCATCCCCATTCAAAATTCCCAACTTAATTCTTCCATGA
AATACATAAGACCAACCTGGAAATTCCCCGCGGGAATACTAAAAACTGG
ATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGTACTTTACAAAAGTAAAACTCAATTGGA
ACCATGGAGTTTTCTCTTTATCTCTGGTTTGAGTTTATAAAAATAGAATG
GAAAGCCACCAGAGAATACGGGGAATCGATTAAAAATGTGACAGAAATGA
AACATGAAAATTCCATAAAACATTATCAACAGTATTCAATACCAAGGACC
AGAGATGCTGAAATAAATAGAAAGACACACAGCGAGCACTCTGTCATAAA
AATGGTGAATCTTACTAATAATCATGAACACAGCAAGATATTGATTGACA
AGTCATCCAGATTTAAAAAGAAATACAAACAAACCACTACACATAAAACT
ATTATGGTAACAGCCAAATATTGACATTTGAATTATTTTGTTATAAGTTG
TGAGCCCAGTAAATTTCTTACAGTTTATGAACACAGTGTTTAAAAGAAAT
TTTGAATTCGGTATTCTGCCAACATATTATGATTGTGGAAATGTAGGCTG
GATTTTTAAACAATTTCACTTCCTGNAAGTAGTGCATTGTCATGACCATG
GACAGTAAAATGCAAATCCTTCCACAAGAGGGATCAATTTATGTCGTATA
ACCCTATTTACAAATGGATGGCTTTTGGCTCACTCTAACTTGCATTTTTT
TCATCTTCTATTTATGTAAAGGTTGCCTTTTTGTCTCGGTTTTTTTATAA
AAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_f11.g1 MSMg01no415_f11.g1 CHROMAT_FILE:
MSMg01no415_f11.g1 PHD_FILE: MSMg01no415_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:42 2005
         (466 letters)



>mm_chr11_15273693_15274557
          Length = 865

 Score =  808 bits (418), Expect = 0.0
 Identities = 454/466 (97%), Gaps = 1/466 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtactttacaaaagtaaaactcaattggaaccatggagttttctctttatctctggtt 60
           ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 665 aagtactttacaaaagtaaaactcacttggaaccatggagttgtctctttatctctggtt 606

                                                                       
Query: 61  tgagtttataaaaatagaatggaaagccaccagagaatacggggaatcgattaaaaatgt 120
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 605 tgagtttataaaaatagaatggaaagccaccagagaatacagggaatcgattaaaaatat 546

                                                                       
Query: 121 gacagaaatgaaacatgaaaattccataaaacattatcaacagtattcaataccaaggac 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gacagaaatcaaacatgaaaattccataaaacattatcaacagtattcaataccaaggac 486

                                                                       
Query: 181 cagagatgctgaaataaatagaaagacacacagcgagcactctgtcataaaaatggtgaa 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 485 cagagatgctgaaataaatagaaagacacacagcgagcactctgtcttaaaaatggtgaa 426

                                                                       
Query: 241 tcttactaataatcatgaacacagcaagatattgattgacaagtcatccagatttaaaaa 300
            || || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 actgac-aataatcatgaacacagcaagatattgattgacaagtcatccagatttaaaaa 367

                                                                       
Query: 301 gaaatacaaacaaaccactacacataaaactattatggtaacagccaaatattgacattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gaaatacaaacaaaccactacacataaaactattatggtaacagccaaatattgacattt 307

                                                                       
Query: 361 gaattattttgttataagttgtgagcccagtaaatttcttacagtttatgaacacagtgt 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 306 gaattattttgttgtaagttgtgagcccagtaaatttcttacagtttatgagcacagtgt 247

                                                         
Query: 421 ttaaaagaaattttgaattcggtattctgccaacatattatgattg 466
           |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 246 ttaaaagaaattttgaattcagtattctgccaacatattatgattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 865
Length adjustment: 10
Effective length of query: 456
Effective length of database: 855
Effective search space:   389880
Effective search space used:   389880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)