MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-415G02
Chromosome	11 (Build37)
Map Location	84,283,928 - 84,471,975
singlet/doublet	doublet
Overlap gene	Aatf, Lhx1
Upstream gene	Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671
Downstream gene	Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3
Link	Open Mouse BAC browser

Click to get alignment info.

name	Taf15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70439 MGI:1917689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	OTTMUSG00000000990 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:629303 MGI:3650286
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20304 MGI:98262
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20308 MGI:104533
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20305 MGI:98263
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC194905 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:194905
definition	note : ribosomal protein L9 pseudogene pseudo : _no_value

name	Ccl3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20302 MGI:98260
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccl4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20303 MGI:98261
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	OTTMUSG00000000971 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100034251 MGI:3649773
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Expi (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14038 MGI:107506
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1100001G20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66107 MGI:1913357
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2700008B19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217026 MGI:1919790
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC676191 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:676191
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	Tcf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21410 MGI:98505
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ddx52 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78394 MGI:1925644
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ap1gbp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217030 MGI:1354742
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dusp14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56405 MGI:1927168
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tada2l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217031 MGI:2144471
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	OTTMUSG00000000997 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:628813 MGI:3650287
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acaca (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107476 MGI:108451
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043671 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043671
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 92 ESTs

name	Aatf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56321 MGI:1929608
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lhx1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16869 MGI:99783
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mrm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217038 MGI:2443470
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC022224 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192970 MGI:2652816
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ggnbp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217039 MGI:2387356
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pigw (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70325 MGI:1917575
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Znhit3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:448850 MGI:3051596
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Car4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12351 MGI:1096574
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Usp32 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237898 MGI:2144475
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668794 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668794
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 8 Proteins pseudo : _no_value

name	LOC234848 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:234848
definition	note : ribosomal protein L13 pseudogene pseudo : _no_value

name	1700125H20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73634 MGI:1920884
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 3 Proteins

name	Appbp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66884 MGI:1914134
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D630032N06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:654810 MGI:3603817
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs

name	Ppm1d (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53892 MGI:1858214
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bcas3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192197 MGI:2385848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Taf15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803447 GeneID:70439 MGI:1917689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor transcript_id : NM_027427.2

name	OTTMUSG00000000990 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113865928 GeneID:629303 MGI:3650286
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, OTTMUSG00000000990 transcript_id : NM_001045543.1

name	Ccl5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803000 GeneID:20304 MGI:98262
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 5 transcript_id : NM_013653.2

name	Ccl9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85540457 GeneID:20308 MGI:104533
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 9 transcript_id : NM_011338.2

name	Ccl6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126506295 GeneID:20305 MGI:98263
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 6 transcript_id : NM_009139.3

name	Ccl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126432552 GeneID:20302 MGI:98260
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 3 transcript_id : NM_011337.2

name	Ccl4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126366031 GeneID:20303 MGI:98261
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) ligand 4 transcript_id : NM_013652.2

name	OTTMUSG00000000971 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126432557 GeneID:100034251 MGI:3649773
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, OTTMUSG00000000971 transcript_id : NM_001081957.1

name	Expi (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126366027 GeneID:14038 MGI:107506
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : extracellular proteinase inhibitor transcript_id : NM_007969.4

name	1100001G20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126365757 GeneID:66107 MGI:1913357
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1100001G20 gene transcript_id : NM_183249.2

name	2700008B19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126432548 GeneID:217026 MGI:1919790
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2700008B19 gene transcript_id : NM_145432.3

name	Tcf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111185899 GeneID:21410 MGI:98505
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription factor 2 transcript_id : NM_009330.2

name	Ddx52 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33859745 GeneID:78394 MGI:1925644
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 transcript_id : NM_030096.1

name	Ap1gbp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34996506 GeneID:217030 MGI:1354742
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : AP1 gamma subunit binding protein 1 transcript_id : NM_194341.1

name	Dusp14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142360089 GeneID:56405 MGI:1927168
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dual specificity phosphatase 14 transcript_id : NM_019819.3

name	Tada2l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802722 GeneID:217031 MGI:2144471
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcriptional adaptor 2 (ADA2 homolog, yeast)-like transcript_id : NM_172562.2

name	OTTMUSG00000000997 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83776580 GeneID:628813 MGI:3650287
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, OTTMUSG00000000997 transcript_id : NM_001037932.1

name	Acaca (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125656172 GeneID:107476 MGI:108451
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acetyl-Coenzyme A carboxylase alpha transcript_id : NM_133360.2

name	LOC100043671 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149262012 GeneID:100043671
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 92 ESTs product : hypothetical protein LOC100043671 transcript_id : XM_001481024.1

name	Aatf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9790012 GeneID:56321 MGI:1929608
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : apoptosis antagonizing transcription factor transcript_id : NM_019816.1

name	Lhx1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130719 GeneID:16869 MGI:99783
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LIM homeobox protein 1 transcript_id : NM_008498.2

name	Mrm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21703863 GeneID:217038 MGI:2443470
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) transcript_id : NM_145433.1

name	BC022224 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802498 GeneID:192970 MGI:2652816
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC022224 transcript_id : NM_177564.4

name	Ggnbp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:139949212 GeneID:217039 MGI:2387356
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gametogenetin binding protein 2 transcript_id : NM_153144.2

name	Pigw (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117647260 GeneID:70325 MGI:1917575
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol glycan anchor biosynthesis, class W transcript_id : NM_001077636.1

name	Pigw (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117647258 GeneID:70325 MGI:1917575
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol glycan anchor biosynthesis, class W transcript_id : NM_027388.2

name	Znhit3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385710 GeneID:448850 MGI:3051596
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, HIT type 3 transcript_id : NM_001005223.2

name	Car4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6671677 GeneID:12351 MGI:1096574
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carbonic anhydrase 4 transcript_id : NM_007607.1

name	Usp32 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126032298 GeneID:237898 MGI:2144475
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 32 transcript_id : NM_001029934.1

name	1700125H20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94390268 GeneID:73634 MGI:1920884
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 3 Proteins product : RIKEN cDNA 1700125H20 gene, transcript variant 1 transcript_id : XM_126139.5

name	Appbp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892350 GeneID:66884 MGI:1914134
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amyloid beta precursor protein (cytoplasmic tail) binding protein 2 transcript_id : NM_025825.3

name	Ppm1d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560441 GeneID:53892 MGI:1858214
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 1D magnesium-dependent, delta isoform transcript_id : NM_016910.2

name	Bcas3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801917 GeneID:192197 MGI:2385848
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : breast carcinoma amplified sequence 3 transcript_id : NM_138681.3

name	Taf15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794412 CCDS:CCDS25168.1 GeneID:70439 MGI:1917689
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : TATA box binding protein (TBP)-associated factor, RNA polymerase II, N, 68kD (RNA binding protein 56); TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68 kDa product : TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_id : NP_081703.1

name	OTTMUSG00000000990 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113865929 GeneID:629303 MGI:3650286
definition	codon_start : 1 product : hypothetical protein LOC629303 protein_id : NP_001039008.1

name	Ccl5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305461 GeneID:20304 MGI:98262
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : small inducible cytokine A5 product : chemokine (C-C motif) ligand 5 protein_id : NP_038681.1

name	Ccl9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755434 CCDS:CCDS25170.1 GeneID:20308 MGI:104533
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A9; MIP-1 gamma; small inducible cytokine A10 product : chemokine (C-C motif) ligand 9 protein_id : NP_035468.1

name	Ccl6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677883 CCDS:CCDS25171.1 GeneID:20305 MGI:98263
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A6; CC chemokine; CC chemokine C10 product : chemokine (C-C motif) ligand 6 protein_id : NP_033165.1

name	Ccl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755432 GeneID:20302 MGI:98260
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IDA]; GO:0005125 - cytokine activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A3; MIP1 (a); MIP-1 alpha; macrophage inflammatory protein-1alpha product : chemokine (C-C motif) ligand 3 protein_id : NP_035467.1

name	Ccl4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305459 GeneID:20303 MGI:98261
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine A4; MIP-1 beta product : chemokine (C-C motif) ligand 4 protein_id : NP_038680.1

name	OTTMUSG00000000971 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126432558 GeneID:100034251 MGI:3649773
definition	codon_start : 1 note : novel protein similar to extracellular proteinase inhibitor Expi product : extracellular proteinase inhibitor family member protein_id : NP_001075426.1

name	Expi (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83921600 CCDS:CCDS25175.1 GeneID:14038 MGI:107506
definition	codon_start : 1 product : extracellular proteinase inhibitor protein_id : NP_031995.3

name	1100001G20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34304022 GeneID:66107 MGI:1913357
definition	codon_start : 1 product : WDNM1-like protein protein_id : NP_899072.1

name	2700008B19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249080 GeneID:217026 MGI:1919790
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC217026 protein_id : NP_663407.2

name	Tcf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111185900 CCDS:CCDS25179.1 GeneID:21410 MGI:98505
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IPI] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IEA] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IMP]; GO:0030902 - hindbrain development [Evidence IMP]; GO:0045941 - positive regulation of transcription [Evidence IEA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : putative; transcription factor 2 (MGD\|MGI:98505); hepatocyte nuclear factor-1 beta product : transcription factor 2 protein_id : NP_033356.2

name	Ddx52 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859746 CCDS:CCDS25180.1 GeneID:78394 MGI:1925644
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 52 product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 protein_id : NP_084372.1

name	Ap1gbp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34996507 CCDS:CCDS25181.1 GeneID:217030 MGI:1354742
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006897 - endocytosis [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : AP1 gamma subunit binding protein 1 protein_id : NP_919322.1

name	Dusp14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560388 CCDS:CCDS25182.1 GeneID:56405 MGI:1927168
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO:0008138 - protein tyrosine/serine/threonine phosphatase activity [Evidence IEA] GO_process : GO:0006470 - protein amino acid dephosphorylation [Evidence IEA] codon_start : 1 note : Mkp-1 like protein tyrosine phosphatase; MAP kinase phsophatase 6 product : dual specificity phosphatase 14 protein_id : NP_062793.2

name	Tada2l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369796 CCDS:CCDS25183.1 GeneID:217031 MGI:2144471
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : transcriptional adaptor 2 (ADA2 homolog, yeast)-like protein_id : NP_766150.1

name	OTTMUSG00000000997 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83776581 CCDS:CCDS25184.1 GeneID:628813 MGI:3650287
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC628813 protein_id : NP_001033021.1

name	Acaca (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125656173 CCDS:CCDS25185.1 GeneID:107476 MGI:108451
definition	EC_number : 6.4.1.2 GO_function : GO:0003989 - acetyl-CoA carboxylase activity [Evidence IMP]; GO:0005524 - ATP binding [Evidence IEA]; GO:0009374 - biotin binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : acetyl-CoA carboxylase 265 product : acetyl-Coenzyme A carboxylase alpha protein_id : NP_579938.2

name	LOC100043671 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149262013 GeneID:100043671
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481074.1

name	Aatf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790013 CCDS:CCDS25186.1 GeneID:56321 MGI:1929608
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007155 - cell adhesion [Evidence IMP]; GO:0040016 - embryonic cleavage [Evidence IMP]; GO:0042985 - negative regulation of amyloid precursor protein biosynthesis [Evidence IDA]; GO:0007346 - regulation of progression through mitotic cell cycle [Evidence IMP]; GO:0042254 - ribosome biogenesis and assembly [Evidence IMP] codon_start : 1 note : traube product : apoptosis antagonizing transcription factor protein_id : NP_062790.1

name	Lhx1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678688 CCDS:CCDS25187.1 GeneID:16869 MGI:99783
definition	GO_component : GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0001706 - endoderm formation [Evidence IMP]; GO:0010003 - gastrulation (sensu Mammalia) [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : LIM homeo box protein 1 product : LIM homeobox protein 1 protein_id : NP_032524.1

name	Mrm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89337263 GeneID:217038 MGI:2443470
definition	GO_function : GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0008173 - RNA methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006396 - RNA processing [Evidence IEA] codon_start : 1 product : mitochondrial rRNA methyltransferase 1 homolog protein_id : NP_663408.2

name	BC022224 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:109715818 GeneID:192970 MGI:2652816
definition	GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : short-chain dehydrogenase/reductase protein_id : NP_808232.2

name	Ggnbp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:139949213 GeneID:217039 MGI:2387356
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA] codon_start : 1 note : dioxin inducible factor 3; gametogenin binding protein 2 product : zinc finger protein 403 protein_id : NP_694784.2

name	Pigw (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117647261 GeneID:70325 MGI:1917575
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016407 - acetyltransferase activity [Evidence IEA]; GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006506 - GPI anchor biosynthesis [Evidence IEA] codon_start : 1 product : phosphatidylinositol glycan, class W protein_id : NP_001071104.1

name	Pigw (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117647259 GeneID:70325 MGI:1917575
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016407 - acetyltransferase activity [Evidence IEA]; GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006506 - GPI anchor biosynthesis [Evidence IEA] codon_start : 1 product : phosphatidylinositol glycan, class W protein_id : NP_081664.2

name	Znhit3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:52421332 CCDS:CCDS25189.1 GeneID:448850 MGI:3051596
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : myosin head domain containing 1 product : thyroid hormone receptor interactor 3 protein_id : NP_001005223.1

name	Car4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671678 CCDS:CCDS25190.1 GeneID:12351 MGI:1096574
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004089 - carbonate dehydratase activity [Evidence IEA]; GO:0048503 - GPI anchor binding [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006730 - one-carbon compound metabolism [Evidence IEA] codon_start : 1 note : CA IV product : carbonic anhydrase 4 protein_id : NP_031633.1

name	Usp32 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126032299 GeneID:237898 MGI:2144475
definition	GO_function : GO:0008233 - peptidase activity [Evidence IEA] codon_start : 1 product : ubiquitin specific protease 32 protein_id : NP_001025105.1

name	1700125H20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38091535 GeneID:73634 MGI:1920884
definition	codon_start : 1 product : hypothetical protein LOC73634 isoform 1 protein_id : XP_126139.2

name	Appbp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313248 CCDS:CCDS25193.1 GeneID:66884 MGI:1914134
definition	GO_component : GO:0030659 - cytoplasmic vesicle membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008017 - microtubule binding [Evidence ISS] GO_process : GO:0046907 - intracellular transport [Evidence ISS]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : amyloid beta precursor protein (cytoplasmic tail) binding protein 2 protein_id : NP_080101.1

name	Ppm1d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560442 CCDS:CCDS25194.1 GeneID:53892 MGI:1858214
definition	GO_component : GO:0008287 - protein serine/threonine phosphatase complex [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0004724 - magnesium-dependent protein serine/threonine phosphatase activity [Evidence ISS]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IMP]; GO:0006470 - protein amino acid dephosphorylation [Evidence IEA]; GO:0009617 - response to bacterium [Evidence IMP] codon_start : 1 exception : mismatches in translation product : protein phosphatase 1D magnesium-dependent, delta isoform protein_id : NP_058606.2

name	Bcas3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37620155 CCDS:CCDS25195.1 GeneID:192197 MGI:2385848
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 exception : mismatches in translation product : breast carcinoma amplified sequence 3-like protein_id : NP_619622.2

name	LOC676191 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:676191
definition	number : 1 pseudo : _no_value

name	LOC668794 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149262014 GeneID:668794
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 8 Proteins product : similar to Ribosomal protein L18 pseudo : _no_value transcript_id : XR_034954.1

name	D630032N06Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149262015 GeneID:654810 MGI:3603817
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs product : RIKEN cDNA D630032N06 gene transcript_id : XR_035464.1

clone name	MSMg01-360I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062G19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-264G03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-480I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397I22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-399C22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-542D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-207L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373O18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-464F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-204B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526I18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-450D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-188H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-193J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374A16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-547N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171P12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285F11
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-415G02.T7 (MSMg01no415_g02.b1)	MSMg01-415G02.TJ (MSMg01no415_g02.g1)
ACC	AG511453	AG511454
length	760	761
length of high quality (start - end)	150 (92 - 241)	239 (71 - 309)
definition	CHROMAT_FILE: MSMg01no415_g02.b1 PHD_FILE: MSMg01no415_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:45 2005	CHROMAT_FILE: MSMg01no415_g02.g1 PHD_FILE: MSMg01no415_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:45 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(84,283,928 - 84,284,077)	(84,471,737 - 84,471,975)
sequence	TATTTGCGCGCGCCAAAAAAATCACTATTCCAAGAGGATCCGCGGAATTC CTACTTTCCACACAAATGTAGATGTGACAGGAATACTACTAAGCCTCACG CTGGCCCCTATCGAGCAGTGCTGCTCTCTGCAGCTCACCCGTTCCTCACA GAAAGAGCTCATTCTGCAGGCTGTTCATATAACTACCCTCCCAGAGACTG TTCTCTAAGCGTGCATCCCGAGTTCTTACCGGGTCTCCTGGCTAGGTCTC TGCCATAGGCTCTGGTTACTGGTTCCGCGTTGCCAAGAGCTCGGTAGCGT ATAGCGCTTGTTGTGTGTCCTCCGAATCAATCTTTCTTTGTCCATCACGA TATGATCGATCCGACTCACGATTGATCGCCCTATGTTTCCCTCCCCCTCC CTCATCTGACCTTCCTGCCACATAGCGCACGTCAGTGCCTCAGTGCCCCT ACTTTGCTCTTTCCTCTACTCCTCTACAGACTCGTCCCCCCCTCTGATAT TCCTCCCGTTTCCCTTTTATTTTCCCCTCCCTTTTTTTCCTTTCCCCCTT TTTTTTTTCCCCCCCTCTTTTTTCTTTTCCCCTCCCCCTTCCTTCCCCAA TTGTTTTCTTCTCTCCTCCTCTTCCTCTCTCCCCCTCTCCCTCCCTTTTC CCCTCTTCCCCCGCTTCTTACCCCCCTCTCCTTTTCCATTTTTCCTTCTT TCCACCCCTATCTTTTCTTCCTCTCTCTCCCCTCTCCCTCCTCTTACCCT CCCTTTCCCG	AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXCTCAGGGCTGCAAAGCGTTAAGAATATCTG AAGAGCTCAGAGAGCTGGCCCCTGACCCAGATGTTCACAGCAGCATAAGC CTGTCCCCATAGTGGCCTCTTCTCTCTGGCAGAGTCCACTGGTGACAGGG CGTAACTGGGCAGGACCTAGCACAGCAGTAGAGAGGCCAGAGTGGGGTGC GTTTCTGGCTGTGACTGGGGCAGGCTTGTTGGGCCCCACGCAAACCACTG TGCTCACACCATTTATGTCTGCTAAGACTCACGAAACTCATGAAGGGCTG GAAAGGCCTCTTCAAACTGTCTTCAGAAAACAATGAATCTGCTGGCTCTG CTAATGCGCTACCTCATGTGTTAGCCAGTTCGTTTTGATTCAGGCCCCTA CGTCAGTTGTATCTTTTCCTCACTCCAGCTGCCCATAGTTGCCACCTGCT CTCTCAGTTCCACTGGATTTCTTTCACAGTTGTGATGTTTCTCCTTCCCC CTTCGCCTGCTTGCTTATCTCATTCCCAGTCTTCCCTTCTCCATTTTCCC CTTACCTTCCGCTCTCGCCTCCGTCTTTTCCTTTCCTTCCCCCCTCTCTT TTGCTCCCCCTTTCTTTTCCCTTTCCTTTCCCCCCCCTTTTGCTTCTGTC ACTTCGCTTCTCCTCTCACTTTTTTCCTCCCTTTTCCTCTACCTTCCTTC TTTTTCTATCN
quality values	Open. Hide. 9 9 10 9 9 9 8 8 6 6 6 15 13 15 9 9 9 9 9 9 12 12 19 14 16 9 11 9 9 9 9 9 9 9 14 14 14 12 12 17 22 31 37 37 31 31 31 31 34 34 22 13 8 8 8 8 8 10 9 10 8 8 9 10 12 12 21 11 11 11 12 12 26 27 36 19 19 10 10 10 10 15 18 20 28 31 15 22 10 8 8 10 26 31 36 36 28 30 36 31 44 32 30 30 44 34 19 8 8 8 8 8 14 12 20 20 32 32 43 42 42 47 47 47 48 48 48 42 44 39 42 37 35 35 32 36 32 32 32 42 42 43 57 57 57 57 42 42 32 32 32 32 33 33 33 35 35 37 39 44 44 47 47 47 46 44 44 43 43 43 46 43 46 43 43 43 43 43 46 43 47 47 46 47 59 47 43 43 43 37 32 40 33 40 37 37 28 24 24 13 13 13 19 28 37 28 28 20 28 28 34 28 32 30 30 28 30 20 24 11 11 11 23 24 37 39 39 39 32 31 20 20 20 20 24 32 39 28 27 15 11 11 12 12 16 24 22 23 23 21 21 12 12 10 10 9 9 9 9 9 12 11 11 10 9 12 9 9 10 10 24 19 24 19 22 22 12 12 12 13 13 15 15 12 11 11 11 11 11 11 9 11 15 15 13 9 10 12 13 9 9 9 12 12 12 10 10 10 8 8 8 8 8 8 8 9 11 12 23 23 31 20 20 15 18 15 15 15 15 12 11 12 27 27 47 42 48 43 40 30 25 16 17 10 10 10 12 8 9 9 9 9 10 15 12 21 15 15 9 8 8 8 8 8 8 8 8 6 6 8 8 9 11 11 12 11 13 13 13 11 10 10 11 10 11 10 10 15 17 17 13 12 10 10 10 16 19 19 18 16 18 11 11 11 11 17 8 8 8 8 10 8 10 12 11 11 11 11 8 8 8 8 8 8 8 8 11 11 12 12 12 11 11 11 9 9 9 9 9 8 8 8 6 6 6 8 8 16 10 8 6 6 8 8 13 8 8 11 8 10 10 10 9 9 10 10 9 8 8 8 8 8 10 8 10 10 13 9 9 9 6 8 6 6 8 8 19 15 8 8 8 8 8 8 8 6 6 6 6 8 8 8 6 6 8 8 10 13 10 9 8 8 8 8 11 13 15 12 11 11 11 9 9 9 9 14 10 15 10 12 10 12 13 14 9 10 10 10 17 23 25 21 13 12 12 10 17 10 11 11 15 15 14 15 11 11 11 11 12 16 19 28 19 16 12 11 10 19 18 15 12 9 9 10 11 8 11 8 8 8 8 8 8 8 15 13 15 10 10 9 9 9 10 10 10 11 9 9 9 8 8 6 6 8 15 8 8 10 10 10 10 8 8 8 8 8 9 13 14 15 12 10 10 10 10 9 12 13 9 9 9 9 12 13 19 18 18 16 15 10 10 10 11 9 9 8 9 12 13 13 8 8 8 8 8 8 10 10 14 11 15 6 6 6 6 10 10 13 11 11 12 19 19 20 17 10 10 8 10 8 11 19 13 12 8 10 6 6 6 8 8 10 10 9 8 10 8 8 8 8 8 10 8 8 9 11 11 9 9 11 11 16 11 9 9 9 6 10 8 10 8 8 8 8 8 8 8 9 9 9 13 12 8 8 6 7 7 8 9 9 14 13 13 8 7 7 9 8 8 8 10 8 6 6 8 13 15 15 9 9	Open. Hide. 11 11 11 21 27 20 18 20 24 28 27 31 22 28 37 37 37 37 42 47 41 41 25 25 18 9 7 7 8 8 8 9 10 15 19 19 21 19 25 18 27 36 38 53 47 47 37 37 37 34 34 25 21 8 10 8 8 8 9 15 21 23 34 30 22 29 29 35 36 36 50 47 47 47 43 43 53 53 53 53 50 50 57 48 46 48 54 57 57 59 59 54 54 54 42 47 47 48 48 57 57 68 68 68 57 50 47 42 42 37 37 47 57 54 54 54 57 54 48 48 57 57 48 50 50 46 41 57 57 57 57 68 57 57 57 57 57 57 57 57 57 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 57 68 57 57 57 52 52 59 59 57 68 68 68 68 68 68 59 59 52 52 52 57 57 57 52 52 57 59 57 57 57 54 50 50 50 50 51 68 68 57 57 57 52 52 52 57 57 57 54 59 59 57 57 57 57 57 57 57 48 48 59 57 59 59 57 57 59 59 59 57 57 47 57 57 57 54 54 57 59 57 57 47 47 42 35 35 35 42 43 47 54 54 57 57 68 68 57 59 57 57 43 41 47 48 48 50 50 48 48 48 48 48 54 54 54 59 59 54 54 54 59 57 48 48 48 48 48 48 48 48 48 57 57 57 57 48 48 48 59 59 59 59 59 41 41 39 28 24 11 11 11 9 9 9 10 10 13 11 24 24 59 59 37 37 35 35 35 39 39 57 57 57 57 59 59 48 48 48 57 43 43 43 43 43 43 43 42 42 35 32 41 30 30 28 32 23 30 30 37 41 32 32 36 36 28 36 37 57 47 44 44 43 42 37 35 35 35 37 35 42 33 30 28 32 41 31 31 35 35 35 23 32 23 19 9 9 9 16 26 32 33 33 33 18 14 8 8 8 8 8 11 11 14 21 21 10 10 10 13 12 10 8 8 8 10 8 8 10 12 19 18 12 11 11 12 12 12 11 15 12 15 12 11 9 14 15 10 8 8 9 12 13 15 12 11 11 12 10 10 10 10 10 14 25 27 12 11 11 13 19 11 11 10 15 9 9 9 9 9 10 10 19 19 11 8 8 8 8 10 10 11 12 8 8 8 10 10 8 8 8 11 19 16 19 10 9 10 10 10 9 10 10 10 10 10 10 10 10 10 8 10 8 8 10 8 9 9 9 9 11 11 10 10 8 8 10 8 8 8 8 9 6 6 8 8 8 8 22 15 18 9 9 9 10 8 8 8 8 6 6 8 8 8 8 8 6 6 6 6 8 8 10 10 11 15 10 8 8 8 8 8 12 15 20 20 16 17 19 15 16 14 17 17 10 11 10 9 9 9 9 8 19 13 16 15 13 13 12 8 8 8 10 12 10 8 8 8 8 8 8 9 14 12 12 12 14 15 18 13 13 15 24 16 21 18 19 22 17 14 15 12 12 10 10 10 10 10 12 10 10 10 10 10 10 9 8 8 8 8 11 11 12 11 11 12 10 10 8 8 8 8 8 10 10 17 17 17 15 11 15 15 18 18 24 25 30 30 25 22 13 10 11 12 12 8 8 8 8 8 8 8 8 8 10 10 10 9 9 11 12 9 9 10 12 12 10 9 9 9 10 12 18 23 19 14 9 8 8 8 8 12 12 12 13 8 8 8 8 11 8 9 12 12 13 12 8 8 8 8 8 8 10 10 8 8 10 8 8 9 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no415_g02.b1 MSMg01no415_g02.b1 CHROMAT_FILE:
MSMg01no415_g02.b1 PHD_FILE: MSMg01no415_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:45 2005
         (150 letters)



>mm_chr11_84283728_84284277
          Length = 550

 Score =  259 bits (134), Expect = 5e-74
 Identities = 146/150 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcctcacgctggcccctatcgagcagtgctgctctctgcagctcacccgttcctcacag 60
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcctcacgctggccccaaccgagcagtgctgctctctgcagctcacccgttcctcacag 260

                                                                       
Query: 61  aaagagctcattctgcaggctgttcatataactaccctcccagagactgttctctaagcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagagctcattctgcaggctgttcatataactaccctcccagagactgttctctaagcg 320

                                         
Query: 121 tgcatcccgagttcttaccgggtctcctgg 150
           |||||||||||||||||| || ||||||||
Sbjct: 321 tgcatcccgagttcttactggttctcctgg 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 550
Length adjustment: 8
Effective length of query: 142
Effective length of database: 542
Effective search space:    76964
Effective search space used:    76964
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no415_g02.g1 MSMg01no415_g02.g1 CHROMAT_FILE:
MSMg01no415_g02.g1 PHD_FILE: MSMg01no415_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:45 2005
         (239 letters)



>mm_chr11_84471537_84472175
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagggctgcaaagcgttaagaatatctgaagagctcagagagctggcccctgacccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctcagggctgcaaagcgttaagaatatctgaagagctcagagagctggcccctgacccag 380

                                                                       
Query: 61  atgttcacagcagcataagcctgtccccatagtggcctcttctctctggcagagtccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atgttcacagcagcataagcctgtccccatagtggcctcttctctctggcagagtccact 320

                                                                       
Query: 121 ggtgacagggcgtaactgggcaggacctagcacagcagtagagaggccagagtggggtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggtgacagggcgtaactgggcaggacctagcacagcagtagagaggccagagtggggtgc 260

                                                                      
Query: 181 gtttctggctgtgactggggcaggcttgttgggccccacgcaaaccactgtgctcacac 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtttctggctgtgactggggcaggcttgttgggccccacgcaaaccactgtgctcacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information