BAC Information

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BAC

Clone NameMSMg01-415H18
Chromosome11 (Build37)
Map Location 55,551,404 - 55,551,879
singlet/doubletsinglet
Overlap genenone
Upstream geneCdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1
Downstream geneNmur2, LOC100040816, LOC624168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415H18.T7 (MSMg01no415_h18.b1)MSMg01-415H18.TJ (MSMg01no415_h18.g1)
ACCAG511533AG511534
length750735
length of high quality
(start - end)		480 (37 - 516)463 (66 - 528)
definitionCHROMAT_FILE: MSMg01no415_h18.b1 PHD_FILE: MSMg01no415_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:53 2005CHROMAT_FILE: MSMg01no415_h18.g1 PHD_FILE: MSMg01no415_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTT
GGATGACATAAATTCATAAAACTGTTAACATGAGTTCATGACATACAAGC
CCATACTCTCACATATGCACACAAACTAAAAGGTGTAGTCCCCAAACAGT
GATAGCTGCTGCCATGCTGAACATTTCCTATGTGGCAGGTACTTCTGCTG
CCCTTTGTGGGACACAGCACTTATTCTTTCACAACCAAAACCTGTAGGCT
TAGCATTTCTATTGCCTCCTCCTGGGAAATAAGCAAACTTAAGCATAACA
ACATTGTTAGATAGGGTCTGGAGAAATGGCTCAGTTGGTAAAGTGCTTGC
CTTGTAAACCTGGGGGCTTGAGGGCAAACCCAAGAACACAGGTTAAAAAG
CTGGATGTGGTGACACACAACTATAATCACAGTGGTGAGGAAGCAGAGAC
AGATGGATTCCTGGAGCTTGCCAGCCAGCCAGCCTAGACAGCAAAACCCA
GGTTCTAGTGAAAGATCTTGTCTTAAAAAACAAGAAAGAGTTTGAGGGGT
ATAGTGGTAGTCTCCTTTAAACTCAGCACTCAGGAAACTGAGAAAGGCAT
ATCTCTGTGAGTTTGAAGGCAGCCAAGTGGACCTATTGAGTTCTAGGCCA
ACCCGAAATATATCAAGAGATTCTGTAGAAACATTGTTAGATAAGGAAGG
GAGGGAGGGCCCGCCCTTCCTTTTTTCCCTCTTTCTCTTTCCTTTCTTTG


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATGGGTGT
TGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGATCATGTGGTT
TTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTTTCGTA
TATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAGGATGG
ATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAG
GATTTTTGCTTTTATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCT
TTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAA
AATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTGTGAAAAAGTTTGTG
CAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAA
ACCCGTCTGGTCCTGGGCTTTTTTTTGGCTGGNAGACTATTTATAACTGC
TTCTATTTCTTTAGGGGATATGGGACTGTTTTAAAAGTCCACTTGATCCT
GATTCCACTTTGGTACCCGGTATCTGTCCCGAACATTATATCTTTTCCCC
TATCTTTTTACAGACAAAATTGGTTTATATTTATTACCGGGCCGGGGCTC
CTTCTCTCCCCCTTGGCGAACGTAACCTGATGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_h18.b1 MSMg01no415_h18.b1 CHROMAT_FILE:
MSMg01no415_h18.b1 PHD_FILE: MSMg01no415_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:53 2005
         (480 letters)



>mm_chr11_55551403_55552282
          Length = 880

 Score =  874 bits (452), Expect = 0.0
 Identities = 470/476 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttggatgacataaattcataaaactgttaacatgagttcatgacatacaagc 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaattcagttggaggacataaattcataaaactgttaacatgagttcatgacatacaagc 418

                                                                       
Query: 65  ccatactctcacatatgcacacaaactaaaaggtgtagtccccaaacagtgatagctgct 124
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 417 ccatactctcacatatgcacacaaactaaaagttgtagtccccaaacagtgatagctgct 358

                                                                       
Query: 125 gccatgctgaacatttcctatgtggcaggtacttctgctgccctttgtgggacacagcac 184
           ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 357 gccatgctgaacatttcctgtgtggcaggtacttctgctgctctttgtgggacacagcac 298

                                                                       
Query: 185 ttattctttcacaaccaaaacctgtaggcttagcatttctattgcctcctcctgggaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttattctttcacaaccaaaacctgtaggcttagcatttctattgcctcctcctgggaaat 238

                                                                       
Query: 245 aagcaaacttaagcataacaacattgttagatagggtctggagaaatggctcagttggta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 aagcaaacttaagcataacaacattgttagatagggtctggagaaatggctcagttggta 178

                                                                       
Query: 305 aagtgcttgccttgtaaacctgggggcttgagggcaaacccaagaacacaggttaaaaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 aagtgcttgccttgtaaacctgggggcttgagggcaaacccaagaacacaggttaaaaag 118

                                                                       
Query: 365 ctggatgtggtgacacacaactataatcacagtggtgaggaagcagagacagatggattc 424
           ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 117 ctggatgtggtgacacataactataatcccagtggtgaggaagcagagacagatggattc 58

                                                                   
Query: 425 ctggagcttgccagccagccagcctagacagcaaaacccaggttctagtgaaagat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  ctggagcttgccagccagccagcctagacagcaaaacccaggttctagtgaaagat 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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