BAC Information

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BAC

Clone NameMSMg01-415M23
Chromosome11 (Build37)
Map Location 49,978,898 - 49,979,258
singlet/doubletsinglet
Overlap geneTbc1d9b
Upstream geneBtnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696
Downstream gene3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415M23.T7 (MSMg01no415_m23.b1)MSMg01-415M23.TJ (MSMg01no415_m23.g1)
ACCAG511780AG511781
length737752
length of high quality
(start - end)		487 (66 - 552)458 (70 - 527)
definitionCHROMAT_FILE: MSMg01no415_m23.b1 PHD_FILE: MSMg01no415_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:17 2005CHROMAT_FILE: MSMg01no415_m23.g1 PHD_FILE: MSMg01no415_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CCTACTCCTCTCCATGTGTCTTCTGTCTCTGTGTGGCTTACTGTTTCTGT
CCTGCCTGCAATCTGTCCGTCTGTCAGATGTGTCTGAATCTGTGCCTTTC
TGAATGCTGTCTTTGTGAATCTGTCCCTAACAAAGGGCTTGGCTCTCCTC
TATTAGACAGCTTTACAGGAGGAAGGCACGATGACTGCCTCACAGAAATA
CTTTAACGGTTTTACATGGAGTAAAGCTACCCGTTCCAACCTTCCCAGAT
AACAAGAGGTCCTGTATACAGTCTATCTCTGTGCTCTTTCCAGAACTGGT
GGCATATAGTTATTGTACAAGGTCTCTTTTGTCCTGTTTGCTATTTTCAA
CAAATGGTTATCATAGCATACATTCAAGGGTACCACGCATTGCTCTGGGC
CAGGGGCATGGAAGAAAAACACAATTCAAGATTAAAGCTTAAGCTGCAAA
AACTGCTTCTGTGGGAAATCTCACACAAAGATGGTTGTTACATTGCTCTC
CCAGAGGCAGGTGGAACGGACAGGCTGAGCACACAGCATGACACCAATCA
GCCTTAGGACCCCATCACCCTTAATGAGCTCAAGGTGTGTTGTAAGGTCT
ACCAAAAGCTCCCCACTCTTGAAATAAGAGAAATTGGTCTAATATGGGTT
GCCCCCCAAACCCTTTGTTGGTTCCCCCTCCCCAACG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTTTGTAGACAAGGCTGGCCTCAAACTCAG
AAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCA
CCACACCCGGCTGTATTTTTTTTTAAACATTAAAAAAAAAATTATTTTCC
TGGTATAGGTGTTTGCCTGTTGTACATATGTATGCCTTGTGCATACCTGG
GTGCCCATGGAGCCAGAAGAAGGCATCAGACCTGCGGGAACTGCAGTTGC
AGATGATGTGAACTTTCATGTGTTTGTCCTCTGGAAGAACAGCCAGTGCT
CTTAACTACTGAGCCACGCTCTAAGCTCTCTAATTTAATTCTTGACATTA
AGGTCATGTTCAAGTTCCAGTCAGTCTTCAATACTGTCCACAGGACAGTG
GTGACTTAGGACACTGTTTAGTGTCCCTTCAGTGTCACTTTCTGATGTAT
ATCACCCACCTGGGAAAATCATTTGTTGGTGTTGGTTATTTTTGTTTTTA
ATTTACTTGGACCAGAACCTGGGGCTGTATCTAATCTAGACATGAGTGCT
ACCATCAAGCCACATCCCCAGACCCTTATTCTTGAAAATAATTTAATAAA
ATTAACTCCTTGTTGGTGGGGGGGGGTGGTTTGTTTTCTTAAACAACAAC
CCTCTAATGAACCCCCCCTCGTCCTGTCAAAACCTTCTTAAAAAAAACTC
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_m23.g1 MSMg01no415_m23.g1 CHROMAT_FILE:
MSMg01no415_m23.g1 PHD_FILE: MSMg01no415_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:17 2005
         (458 letters)



>mm_chr11_49978401_49979258
          Length = 858

 Score =  638 bits (330), Expect = 0.0
 Identities = 354/362 (97%), Gaps = 1/362 (0%)
 Strand = Plus / Minus

                                                                       
Query: 97  tttttttttaaacattaaaaaaaaaattattttcctggtataggtgtttgcctgttgtac 156
           |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 858 tttttttttaaacatt-aaaaaaaaattattttcctggtatgggtgtttgcctgttgtac 800

                                                                       
Query: 157 atatgtatgccttgtgcatacctgggtgcccatggagccagaagaaggcatcagacctgc 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 atatgtatgccttgtgcatacctgggtgcccatggagccagaagaaggcatcagacctgc 740

                                                                       
Query: 217 gggaactgcagttgcagatgatgtgaactttcatgtgtttgtcctctggaagaacagcca 276
           ||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||
Sbjct: 739 gggaactgcagttgcagatgatgtgaacggccatgtggttgtcctctggaagaacagcca 680

                                                                       
Query: 277 gtgctcttaactactgagccacgctctaagctctctaatttaattcttgacattaaggtc 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtgctcttaactactgagccacgctctaagctctctaatttaattcttgacattaaggtc 620

                                                                       
Query: 337 atgttcaagttccagtcagtcttcaatactgtccacaggacagtggtgacttaggacact 396
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 619 atgttcaagttccagtcagtcttcaacactgtccacaggacagtgatgacttaggacact 560

                                                                       
Query: 397 gtttagtgtcccttcagtgtcactttctgatgtatatcacccacctgggaaaatcatttg 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtttagtgtcccttcagtgtcactttctgatgtatatcacccacctgggaaaatcatttg 500

             
Query: 457 tt 458
           ||
Sbjct: 499 tt 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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