BAC Information

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BAC

Clone NameMSMg01-416F10
Chromosome11 (Build37)
Map Location 76,767,688 - 76,965,416
singlet/doubletdoublet
Overlap geneBlmh, Slc6a4, Ccdc55, Efcab5, LOC628108
Upstream gene1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1
Downstream geneSsh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416F10.T7 (MSMg01no416_f10.b1)MSMg01-416F10.TJ (MSMg01no416_f10.g1)
ACCAG512180AG512181
length706752
length of high quality
(start - end)		514 (10 - 523)450 (77 - 526)
definitionCHROMAT_FILE: MSMg01no416_f10.b1 PHD_FILE: MSMg01no416_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:56 2005CHROMAT_FILE: MSMg01no416_f10.g1 PHD_FILE: MSMg01no416_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,964,928 - 76,965,416)(76,767,688 - 76,768,137)
sequence
CCTATTCGGAGAGGATCCGCGGAATTCCTTATTTCCTGTGCCACAGCGCA
GAAGAATTCCGGGAGATCATACTGACTGACATGCGGAGGCAGATGTTTGC
AGAACTCTTCCTACAGTGCGACAGTGGGAAGGTAAGTGAAACACCACAAA
CTCCCTCTGTTCCTCACAGTTTGATGTGAGGGACCAGCCTTGACGTGGTG
CTTGTTGGTGATGTTCTAAATTTCGAAAACATCGAGTTTGATGATGGTGG
CCTACTGACCACTATTTGGTAATGAAATTGGTGACTAAGGGGGAAAAGAA
ATACAGAGCATACCGTCTACGCCTTTAAACTCTAAGATTAAAACCTGACT
TAGCAGCCACTTTCTCAAACTGCTAGAAAGTTTTTTGCTCCTATTCTAGA
AAACTTTTGTTTGTACCTGTCTTCTTATTGAATTGGCCCACCCTGTGCAC
ACCTTGAGTGACATTGCTTTTCAGCACTTTCAGCTTGTTGTAGGTCTATC
TCTTGTGTGTGTGAGTGCCACCAGAGGCCAGAGAGGGCTTATTGCTTGGA
GCTGGAGTGGCAGGCATCTGGGACTCTATTTGGGTGCTAGGATATGAACT
TTGGTTCTCATGTTTGAGCATCCAGTGGACTTCACCAGCCCCTTATGCTA
TATCAAAAAACCTGCCACCAGTAAATTCAAATGTAACCGAAATACTTTTA
TAATGC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAACTAAGAATGTGTAAGAGTGCT
GAGTGTGGTGATGGTCTGCCTCCTGCTTTTCTAAGAGTGGTGGGCACTGG
CCCAGATGCCCCTCCCCCCCAAGGGCTGTGAGTCACAGAGCAAGATCACC
TCTATCCAGTATTCTTTGGGAATAATCCACATTTTTCTCCTTACTGAAAG
TATTTTTCGCTGTCTGTTTAAGGGGACCATTTGGGGAAAATCATTTGTTT
TTATAAACGTTGCCCAGGGCATTATTTGTGCTGTGGTGATATGTTAGGCT
TATTAACAACTTGTGTGACTACTGGAATGCTGAATAAGTTTCTATCATAG
ATGAGAGAATTCTGTATACGGCTTCGGAACCTGGTACACAGTGGAGCCAC
CAAAGGGGAGATCTCATCTACACAAGATGCCATGATGGAGGAGGTAAGAA
TTATTTGGGCTTTGCGGCTCGTCTAATAAGCTCCCAGAATAGCCCGTTAG
CCAGTATGGGGGTAGTCACTGGGGTGAGGGTTTAATTGAATGACAGCTAC
TTTTTTTCACTTTCAGGTAAAGACAAAAGGTATTTTAGCTCCAGGTCAGC
CTTCTCTTCTATTATTTTTTTTTACATATTCCCTATTTTTCATTAATATA
GAAATACTTTTTTTTTTTTATGCTGTGAAATAAATTGTTTGTTATTTTTT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_f10.b1 MSMg01no416_f10.b1 CHROMAT_FILE:
MSMg01no416_f10.b1 PHD_FILE: MSMg01no416_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:56 2005
         (514 letters)



>mm_chr11_76964703_76965616
          Length = 914

 Score =  922 bits (477), Expect = 0.0
 Identities = 486/489 (99%)
 Strand = Plus / Minus

                                                                       
Query: 26  cctgtgccacagcgcagaagaattccgggagatcatactgactgacatgcggaggcagat 85
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 cctgtgccacagcgcagaagaattccgggagatcatactgactgacatgcggaggcagat 655

                                                                       
Query: 86  gtttgcagaactcttcctacagtgcgacagtgggaaggtaagtgaaacaccacaaactcc 145
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 654 gtttgcagaactcttcctacagtgcgacagtgggaaggtaggtgaaacaccacaaactcc 595

                                                                       
Query: 146 ctctgttcctcacagtttgatgtgagggaccagccttgacgtggtgcttgttggtgatgt 205
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctctgctcctcacagtttgatgtgagggaccagccttgacgtggtgcttgttggtgatgt 535

                                                                       
Query: 206 tctaaatttcgaaaacatcgagtttgatgatggtggcctactgaccactatttggtaatg 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tctaaatttcgaaaacatcgagtttgatgatggtggcctactgaccactatttggtaatg 475

                                                                       
Query: 266 aaattggtgactaagggggaaaagaaatacagagcataccgtctacgcctttaaactcta 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aaattggtgactaagggggaaaagaaatacagagcataccgtctacgcctttaaactcta 415

                                                                       
Query: 326 agattaaaacctgacttagcagccactttctcaaactgctagaaagttttttgctcctat 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 414 agattaaaacctgacttagcagccactttctcaaactgctagaaagttttttgatcctat 355

                                                                       
Query: 386 tctagaaaacttttgtttgtacctgtcttcttattgaattggcccaccctgtgcacacct 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tctagaaaacttttgtttgtacctgtcttcttattgaattggcccaccctgtgcacacct 295

                                                                       
Query: 446 tgagtgacattgcttttcagcactttcagcttgttgtaggtctatctcttgtgtgtgtga 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tgagtgacattgcttttcagcactttcagcttgttgtaggtctatctcttgtgtgtgtga 235

                    
Query: 506 gtgccacca 514
           |||||||||
Sbjct: 234 gtgccacca 226


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no416_f10.g1 MSMg01no416_f10.g1 CHROMAT_FILE:
MSMg01no416_f10.g1 PHD_FILE: MSMg01no416_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:56 2005
         (450 letters)



>mm_chr11_76767488_76768337
          Length = 850

 Score =  839 bits (434), Expect = 0.0
 Identities = 446/450 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taactaagaatgtgtaagagtgctgagtgtggtgatggtctgcctcctgcttttctaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taactaagaatgtgtaagagtgctgagtgtggtgatggtctgcctcctgcttttctaaga 260

                                                                       
Query: 61  gtggtgggcactggcccagatgcccctcccccccaagggctgtgagtcacagagcaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggtgggcactggcccagatgcccctcccccccaagggctgtgagtcacagagcaagat 320

                                                                       
Query: 121 cacctctatccagtattctttgggaataatccacatttttctccttactgaaagtatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacctctatccagtattctttgggaataatccacatttttctccttactgaaagtatttt 380

                                                                       
Query: 181 tcgctgtctgtttaaggggaccatttggggaaaatcatttgtttttataaacgttgccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tcgctgtctgtttaaggggaccatttggggaaaatcatttgtttttataaatgttgccca 440

                                                                       
Query: 241 gggcattatttgtgctgtggtgatatgttaggcttattaacaacttgtgtgactactgga 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggcattagctgtgctgtggtgatatgttaggcttattaacaacttgtgtgactactgga 500

                                                                       
Query: 301 atgctgaataagtttctatcatagatgagagaattctgtatacggcttcggaacctggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgctgaataagtttctatcatagatgagagaattctgtatacggcttcggaacctggta 560

                                                                       
Query: 361 cacagtggagccaccaaaggggagatctcatctacacaagatgccatgatggaggaggta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacagtggagccaccaaaggggagatctcatctacacaagatgccatgatggaggaggta 620

                                         
Query: 421 agaattatttgggctttgcggctcgtctaa 450
           |||||||||||||||||| |||||||||||
Sbjct: 621 agaattatttgggctttgtggctcgtctaa 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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