BAC Information

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BAC

Clone NameMSMg01-416P09
Chromosome11 (Build37)
Map Location 21,251,968 - 21,252,539
singlet/doubletsinglet
Overlap geneUgp2
Upstream geneLOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035, Peli1, Vps54
Downstream geneLOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1, Ehbp1, LOC100042146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416P09.T7 (MSMg01no416_p09.b1)MSMg01-416P09.TJ (MSMg01no416_p09.g1)
ACCAG512654AG512655
length719739
length of high quality
(start - end)
559 (33 - 591)571 (77 - 647)
definitionCHROMAT_FILE: MSMg01no416_p09.b1 PHD_FILE: MSMg01no416_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:42 2005CHROMAT_FILE: MSMg01no416_p09.g1 PHD_FILE: MSMg01no416_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCCTTCT
ATTTCGCATTAATTTTTATTTCTAGCCTCATATATTCCTGGTTCTATATG
AGAGTAGGTGGTTGAACTTGAGCGAAACATCATGGCCAGCCACATGGAAG
AGAACATCCTTGAAAAGGATTTCAGGATGTTGTCATCTCTGGGTTGTGGT
TCATTCGGGGAGGTAAAGCTTGCCTGCCATCTTCCCACACTTATACGGGT
GGCTGTCAAGGTCCTTGAGAAAAACATCAACAGCATGGCTGACATCACTT
CGAAGCTGGTTCTCCTTCAATCTTTAGAACACAGGAACATTGTTCGATTT
TTTCACATGATTGACACATTGACAACAACTTATGTGATCATGGAGAATGT
GGCAGGAGAGGACCTTGAGAAGTACCTCAGGGCACTGGGCTGTCTGAAAG
AGGAGGAGGCTAGACCTGTTTTTCAGCAGGTCGTGTCAGCAGTTCACTTC
CTCCACCAAAGACACATTGCACATCGCAATATTANATTATAAAACATTCT
GGTCGATGCAGCAGGAAATGCAAAGCTTTGTGACTTTGGCATGGCAATTA
AAACCACAAAAGGGCAGATGTTGGAGGAAACCTGTGTCTCCTTACTCTAT
ATGGCCCCCAGAGATCTTGACAAGGAAACCCTATGATGTGCTGGAAGTTG
AAATGTGGAAGTTTATGAA
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCATTTTCTTTGGCTAAGAAAA
TATTAACTCTGCTATGTAACTATGAAGAAATAAATCATAATAAATAATGT
GTCAGGGACAGTAAAACAAAGACCAAAACAAGGGAGTCCCCCATTATCAT
TGACATTATAAAGAAGAGGAATTTTTTAAATTGTTTTTATTATATTTGTG
TATTTGTGTGTGTGTTTGTGCACCTGCACGTGCACACATTACTCATGTGT
AGAGGGCAGAAGACAACATTTAGGATTCATTCTTTCCTTCTAATATGGGT
TCTAGGGCCTGAACTCAGGTCTTTAGACCTACATGGCAAGCACTGGTCCA
TTTCCTACTGAGTTATGTCGCCAACCCAGTGAGAAAAATTCTAACTTCAG
TGTTACTAATAAGATAATATACTCAAGGCAACTAATGAGAGATTTTTAAA
GAAAAGAAATGGCCTAAATTTAAAAAATGTAGGTACTTTTCTACACATGG
GAGTAAGAGTATTCCTAAGCAGGAACTTATTTATGATTTTCTCACTAGGA
AAAAAAATCTAATGTTGACTCCATTAGCTTAAACTGCTACTGATGAGCAG
GCCTGAGCCCCAGCAAACTCTGGTACACTGGGACCACACTTCAGTTAAGT
TGCACTGAATCATATTTTAAAAGTAATTAAGCTAGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_p09.g1 MSMg01no416_p09.g1 CHROMAT_FILE:
MSMg01no416_p09.g1 PHD_FILE: MSMg01no416_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:42 2005
         (571 letters)



>mm_chr11_21251768_21252738
          Length = 971

 Score = 1044 bits (540), Expect = 0.0
 Identities = 564/572 (98%), Gaps = 1/572 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcattttctttggctaagaaaatattaactctgctatgtaactatgaagaaataaatc 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 tctcattttctttggctaagaaaatattaattctgctatgtaactatgaagaaataaatc 260

                                                                       
Query: 61  ataataaataatgtgtcagggacagtaaaacaaagaccaaaacaagggagtcccccatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataataaataatgtgtcagggacagtaaaacaaagaccaaaacaagggagtcccccatta 320

                                                                       
Query: 121 tcattgacattataaagaagaggaattttttaaattgtttttattatatttgtgtatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcattgacattataaagaagaggaattttttaaattgtttttattatatttgtgtatttg 380

                                                                       
Query: 181 tgtgtgtgtttgtgcacctgcacgtgcacacattactcatgtgtagagggcagaagacaa 240
           |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tgtgtgtgtttgtgcacccgcatgtgcacccattactcatgtgtagagggcagaagacaa 440

                                                                       
Query: 241 catttaggattcattctttccttctaatatgggttctagggcctgaactcaggtctttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catttaggattcattctttccttctaatatgggttctagggcctgaactcaggtctttag 500

                                                                       
Query: 301 acctacatggcaagcactggtccatttcctactgagttatgtcgccaacccagtgagaaa 360
           ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 acccacatggcaagcactggtccatttcctactaagttatgtcgccaacccagtgagaaa 560

                                                                       
Query: 361 aattctaacttcagtgttactaataagataatatactcaaggcaactaatgagagatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattctaacttcagtgttactaataagataatatactcaaggcaactaatgagagatttt 620

                                                                       
Query: 421 taaagaaaagaaatggcctaaatttaaaaaatgtaggtacttttctacacatgggagtaa 480
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 taaagaaaagaaatggcctaaattttaaaaatgtaggtacttttctacacatgggagtaa 680

                                                                       
Query: 481 gagtattcctaagcaggaacttatttatgattttctcactaggaaaaaaaa-tctaatgt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 gagtattcctaagcaggaacttatttatgattttctcactaggaaaaaaaaatctaatgt 740

                                           
Query: 540 tgactccattagcttaaactgctactgatgag 571
           ||||||||||||||||||||||||||||||||
Sbjct: 741 tgactccattagcttaaactgctactgatgag 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)