BAC Information

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BAC

Clone NameMSMg01-416P10
Chromosome11 (Build37)
Map Location 26,868,665 - 26,869,211
singlet/doubletsinglet
Overlap geneLOC100042367
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270
Downstream geneLOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416P10.T7 (MSMg01no416_p10.b1)MSMg01-416P10.TJ (MSMg01no416_p10.g1)
ACCAG512656AG512657
length712738
length of high quality
(start - end)
559 (47 - 605)547 (76 - 622)
definitionCHROMAT_FILE: MSMg01no416_p10.b1 PHD_FILE: MSMg01no416_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:42 2005CHROMAT_FILE: MSMg01no416_p10.g1 PHD_FILE: MSMg01no416_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTAATGCGAGAGGATCCGCGGAATTCTCAACTGTGCCATACCAA
AGGGCTGAGAAGCCCTTGAAAAAATGTTCAACATCATCAGGGAAATGCAA
ATGAAAACAACCCTGAGATTCTACCTCATACCAGTCAAAATGGCTAAGAT
CAAAAATTTAGGTGACAGCACATACTGGCAAGGATGTGGAGAAAGAGGGA
CACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACATCCACTCTGGAAA
TCTGTCTAGCAGTTCCTCAATAAAATGGACATAGTACTACCAGTAGATCT
CTCTCCTGGGCAAATACCCAGAAGATGTTCCAACTGGCAATAACGACACA
TGCTCCACTATGTTTATAGCCGCCTTATTTATAATAGCCAGGAACTGGAA
AAAAACCAGATGTCCCTCAACAGAGCAATGGATACAGAATGTGTGGTACA
TTTACACAATGCAGTACTACTCAGCTATTAAAAACAATGAATTTATGAAA
TTCTTAGGCAAATGGATGTTTCTGGAGGATATCATCCTGAGTGAGGTAAC
CCAATCACAAAAGAAGTCACTTGATATGCACTCACAGATAATTGGATATT
AGCCCAGACACCTAGAATACTTAAGATACAACTTCCAAAACACAAGAAAA
TCAAGAAGGAAGACCAATGCCTTAATACTTCATTCCTCTCTAGAATAGGG
AATAAAATATCG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTGAAAAATTCAGAGTCACGTGGT
GAAGAGAAAATATTCTTTAAGTTAGAACTAAAGTTCTCTGTGTGTATATC
GCATCTTGCTACAGAAAGCATTCTCACTGTGGCTCCTGTGCTTCTTCTCG
TTTGCAAGAATAGAGTTGGTATATGTGATATCTGGAGTCCCTGTCATGGA
TCTTTTATTTGTCATTTACTGTTTCTTATTCCTGAATCCTACTTTAATTG
CCTTCTTATTCTTCTGAAATATTGTGGAAGGACAGAATCACACATTCTGA
TATGTGCTTTATTGATTCATATCCTAAGATAATATGGTCGAAGTAGTTGC
CTATGGGATTGGGTTTGGCATTAGGAGAAATTGTAGGATTTATAAACAGT
CATTCTACATGTCTAAAAAAATGTAGCTTTGGTGCTACATCTACTCATGT
AAAACAGTTATAGATCTTAGCCAAAGCCACTGTAATTGGCACAGATAGAG
ACAGGGGGCAAGTAGGATAACATGGACAGTGGTCCTCAATTTACAGGACA
TAGTGAATTGCTATCCTGCCTCAGTAGGAAGGAACTGAAGAATTAATTGT
GAGCAATTGTTAATATGTGTTGTAAATGTAACACTTAAATTCACACCCGG
TTCAAAAGGCATAATATTTGGTGCATGGGTAAATACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_p10.g1 MSMg01no416_p10.g1 CHROMAT_FILE:
MSMg01no416_p10.g1 PHD_FILE: MSMg01no416_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:42 2005
         (547 letters)



>mm_chr11_26868465_26869411
          Length = 947

 Score = 1019 bits (527), Expect = 0.0
 Identities = 542/547 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgaaaaattcagagtcacgtggtgaagagaaaatattctttaagttagaactaaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgaaaaattcagagtcacgtggtgaagagaaaatattctttaagttagaactaaagtt 260

                                                                       
Query: 61  ctctgtgtgtatatcgcatcttgctacagaaagcattctcactgtggctcctgtgcttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgtgtgtatatcgcatcttgctacagaaagcattctcactgtggctcctgtgcttct 320

                                                                       
Query: 121 tctcgtttgcaagaatagagttggtatatgtgatatctggagtccctgtcatggatcttt 180
           | |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 321 tatcgtttgcaagaatagagttggtatacgtgatatctgcagtccctgtcatggatcttt 380

                                                                       
Query: 181 tatttgtcatttactgtttcttattcctgaatcctactttaattgccttcttattcttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatttgtcatttactgtttcttattcctgaatcctactttaattgccttcttattcttct 440

                                                                       
Query: 241 gaaatattgtggaaggacagaatcacacattctgatatgtgctttattgattcatatcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaatattgtggaaggacagaatcacacattctgatatgtgctttattgattcatatcct 500

                                                                       
Query: 301 aagataatatggtcgaagtagttgcctatgggattgggtttggcattaggagaaattgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagataatatggtcgaagtagttgcctatgggattgggtttggcattaggagaaattgta 560

                                                                       
Query: 361 ggatttataaacagtcattctacatgtctaaaaaaatgtagctttggtgctacatctact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggatttataaacagtcattctacatgtctaaaaaaatgtagctttggtgctacatctact 620

                                                                       
Query: 421 catgtaaaacagttatagatcttagccaaagccactgtaattggcacagatagagacagg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 catgtaaaacagttatagatcttagccaaagccactgtaattggcacagatagagagagg 680

                                                                       
Query: 481 gggcaagtaggataacatggacagtggtcctcaatttacaggacatagtgaattgctatc 540
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 gggcaagtaggataacatggacagtgatcctcaatttacaggacatagtgaattgctatc 740

                  
Query: 541 ctgcctc 547
           |||||||
Sbjct: 741 ctgcctc 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)