Query= MSMg01no417_a12.b1 MSMg01no417_a12.b1 CHROMAT_FILE:
MSMg01no417_a12.b1 PHD_FILE: MSMg01no417_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:47 2005
(599 letters)
>mm_chr11_42045721_42046723
Length = 1003
Score = 1054 bits (545), Expect = 0.0
Identities = 584/599 (97%), Gaps = 4/599 (0%)
Strand = Plus / Plus
Query: 5 gaattctttgtttgcaactgtagaagtattagtttgtacaagccttggaaggccctttaa 64
|||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgagtggaactgtagaagtatgagtttgtacaagccttggaaggccctttaa 264
Query: 65 agatttgtgtgtttttcccagttggggagccactgaattatgtttagcatagcagtgata 124
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 agatttgtgtgtttttctcagttggagagccactgaattatgtttagcatagcagtgata 324
Query: 125 taatcattctttaggaattttgcctgctttacagaaacatcactcatgtgagcttcagct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taatcattctttaggaattttgcctgctttacagaaacatcactcatgtgagcttcagct 384
Query: 185 gcttagagtgctcctagtctcccacattctcttactaatactcttaaatgtttaaacaat 244
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 385 gcttagagtgctcctagtctcccacattctcttactaatactcttaactgtttaaaaaat 444
Query: 245 gaaaatgtaactatgtttctcacttatctactgtaacagagttccccaagtactgtgagc 304
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 445 gaaaatgtaactatgtttctcacttagctactgtaacagagttcccgaagtactgtgagc 504
Query: 305 agaggtagtagtcgcctctct----ttcccagggagctgctcaaatcttatcatttatag 360
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 505 agaggtagtagtcgcctctctctctttcccagggagctgctcaaatcttatcatttatag 564
Query: 361 tagtgcaggttctctggagtcccaggaatcttctttatcttcttatccctctgatttgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagtgcaggttctctggagtcccaggaatcttctttatcttcttatccctctgatttgat 624
Query: 421 gttgaaagccaataatgactgggcaagtcttacaagaggctctttgtcagaagaggtgga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttgaaagccaataatgactgggcaagtcttacaagaggctctttgtcagaagaggtgga 684
Query: 481 cctcaacagggaattgtaatcatttgcgataggaatatatggaaatttacctctaaagaa 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 685 cctcaacagggaattgtaatcatttgcgatagaaatatatggaaatttacctctaaagaa 744
Query: 541 cacattcaatttggaaaaggtgcagcatgtgtttcagatgttgtcagcatactaaatgt 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cacattcaatttggaaaaggtgcagcatgtgtttcagatgttgtcagcatactaaatgt 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 1003
Length adjustment: 10
Effective length of query: 589
Effective length of database: 993
Effective search space: 584877
Effective search space used: 584877
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_a12.g1 MSMg01no417_a12.g1 CHROMAT_FILE:
MSMg01no417_a12.g1 PHD_FILE: MSMg01no417_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:47 2005
(443 letters)
>mm_chr11_42203843_42204686
Length = 844
Score = 743 bits (384), Expect = 0.0
Identities = 438/474 (92%), Gaps = 31/474 (6%)
Strand = Plus / Minus
Query: 1 tagaatttcattccaaaagatacatttatgaaaaccggggggcggggggagaagacataa 60
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 756 tagaatttcattccaaaagatacatttatgaaaaccggggggcaggggtagaagacataa 697
Query: 61 agaaaaggctgtcagagatataacacctgccccaaactgaatatccaattatgcccacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 agaaaaggctgtcagagatataacacctgccccaaactgaatatccaattatgcccacac 637
Query: 121 cttaaaatagtactttgcaaagcaaccaagtgttgctgtctcaaatc------------a 168
||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 636 cttaaaatagtactttgcaaagcaaccaagtgttgctgtctcaaatcagtgcacgtgtta 577
Query: 169 aaat-ggaccacggttaaatacatctgctcatgaagctggcatgctacaaaatacaaaga 227
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aaatgggaccacagttaaatacatctgctcatgaagctggcatgctacaaaatacaaaga 517
Query: 228 tgcttgctagagcagaataaaatatcagctctcatgacgccaaattttcagctggttaag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tgcttgctagagcagaataaaatatcagctctcatgacgccaaattttcagctggttaag 457
Query: 288 aatgccacccattctatgcagtaacatagtgtaagaacttgactagacttctagtatgta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aatgccacccattctatgcagtaacatagtgtaagaacttgactagacttctagtatgta 397
Query: 348 actaagtggtggataccttatgccccccttctctctgtctctctctctct-t-------- 398
||||||| |||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 396 actaagtagtggataccttatgccccccttctctctctctctctctctctctctctctct 337
Query: 399 ---------tctctctctctctcccctccccctccccttctccctccctctctc 443
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctctctctctctctctctctctcccctccccctccccttctccctccctctctc 283
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 844
Length adjustment: 10
Effective length of query: 433
Effective length of database: 834
Effective search space: 361122
Effective search space used: 361122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
