BAC Information

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BAC

Clone NameMSMg01-417E19
Chromosome11 (Build37)
Map Location 23,024,418 - 23,024,866
singlet/doubletsinglet
Overlap genenone
Upstream geneEhbp1, LOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875
Downstream geneXpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417E19.T7 (MSMg01no417_e19.b1)MSMg01-417E19.TJ (MSMg01no417_e19.g1)
ACCAG512913AG512914
length768790
length of high quality
(start - end)		542 (65 - 606)482 (78 - 559)
definitionCHROMAT_FILE: MSMg01no417_e19.b1 PHD_FILE: MSMg01no417_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:08 2005CHROMAT_FILE: MSMg01no417_e19.g1 PHD_FILE: MSMg01no417_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTGGTTGCATCCCTGCTATGAGCTCTTCCTCGCTCAAACATTCTGT
AACTTTCACACTCTGCTTTTTGCCTGTCCTGTCACTTTCATCGAAGGCCG
GCTGGGGAGGGAAACCATTCTTCCAGAACACATCCATCCCAGCAGATTCG
GGGATCAGGCAGCTTCAGGACTCGCGACACCTGCCTCCGGACGCCCATGG
CTGCACCAGCTTCTGAGAGCTACTCCCCTATGGAGCTAAAGGAGAGAGAG
TGTGCTCTCGAGGGACAGTGATGGGACAGGTCTAAAGGGAGGGGAGGGGC
GAGGGAGGGGCGGGGCGGCGTGGGAAGGGTTTGGGTCCCAGCCTGCAGAC
TTCAGCTTCTAACCTTCCAGTCAATTTCAGTTCATCCAGTGGCTCTCGCT
TGCTTGCTAGTTCTCTGTCCTGGCTGCCACCTTGGATGAGTGACTGGCTC
AGACCCTCGCGTCAGCATCCTAATCTCTAGCTGGCCGCTAGTTCTCACCG
GGCCAGCAGCTTGCCCTGTGTGCAGACATGCGTTCTGCAAGTTTCTGCAT
CTAGAAACTTCCACCACTGAAGTAGTCCAAAGAAAATATGAATAGACTTG
GGTCATGGTAAGTAAAGTATTGTCAAGACCCTACTGGTATAAAGAACTTT
TGTGGTTACGAAGCTAATTACCTTTAAACTTAATTTTATTTTAACTTTGT
TATAACATCACATTGTAG

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAGCACGACAGACAGCAGAGA
TTGGCTTACACCTCTTTCATCCCTTTCCCCGGGGAGAAGCATGTCTTCCT
GCAGGCACAGAGAAGGTCTCTTTCAGATCGCTGTTTTGTCTCCTGCTTTT
AAGAGCAGGAGAAGTCAGAGTACTTGCGTTAGTTATTTCTCTGTTGCTGT
GATAAAACTCCATGACCATGCCGGGTGGTGGTTTCACCAGCCTTTAGTCC
CAACTTTTTGGGAGGCAGAGGCAGGAGGATCACTGGGAGTTTGAGGTCTA
CAGAGAGTTAGTTTCAGGACAGTCAAAGCTACACAGCGAAACCTTATAAC
AAAAACAAACAAACAAACAATAAACACACCACAAGGAAGGCAATTTATAG
AGGGAAGAGTTTTGAGGGGGTTTATGGTTCTAGGACTTCATGATCACTGG
GAAGCACAGCAGGGAAGCTTCACAAGTAGGCATGGAGAAGGGAGAGCTCA
CATCTCATATTGTGAAGAGGAAGCAGAGCACAAACTGGCTGGTAGCTTTT
GGAACCAACTCAGCCCCCCCTGATATACTTACCCTCTCATGGCTAATCCT
CCAATCTTTCTCCAATTAAAATAACCACCGGGGGACCACGATTTTTAATG
GCTCAAACTATGGGCAAAATTCTTTTATTTCTCCGGCCCCGTTATCCGTT
CCTTTCTTAATTTTCACACTGTCCTCACCTCCATACAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_e19.b1 MSMg01no417_e19.b1 CHROMAT_FILE:
MSMg01no417_e19.b1 PHD_FILE: MSMg01no417_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:08 2005
         (542 letters)



>mm_chr11_23024418_23025359
          Length = 942

 Score =  741 bits (383), Expect = 0.0
 Identities = 423/449 (94%), Gaps = 21/449 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctgctatgagctcttcctcgctcaaacattctgtaactttcacactctgctttttgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ccctgctatgagctcttcctcgctcaaacattctgtaactttcacactctgctttttgcc 390

                                                                       
Query: 61  tgtcctgtcactttcatcgaaggccggctggggagggaaaccattcttccagaacacatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgtcctgtcactttcatcgaaggccggctggggagggaaaccattcttccagaacacatc 330

                                                                       
Query: 121 catcccagcagattcggggatcaggcagcttcaggactcgcgacacctgcctccggacgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 329 catcccagcagattcggggatcaggcagcttcaggactcgcgacacctgcctcgggacgc 270

                                                                       
Query: 181 ccatggctgcaccagcttctgagagctactcccctatggagctaaaggagagagagtgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ccatggctgcaccagcttctgagagctactcccctatggagctaaaggagagagagtgtg 210

                                                                       
Query: 241 ctctcgag-------------------gga--cagtgatgggacaggtctaaagggaggg 279
           ||||||||                   |||  |||||||||| |||||||||||||||||
Sbjct: 209 ctctcgaggctccgccccccgcggggcggagccagtgatggggcaggtctaaagggaggg 150

                                                                       
Query: 280 gaggggcgagggaggggcggggcggcgtgggaagggtttgggtcccagcctgcagacttc 339
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 149 gaggggcgagggaggggcggggcggcgtggaaagggtttgggtcccagcctgcagacttc 90

                                                                       
Query: 340 agcttctaaccttccagtcaatttcagttcatccagtggctctcgcttgcttgctagttc 399
           ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 89  agcttctaaccctccagtcagtttcagttcatccagtggctctcgcttgcttgctagttc 30

                                        
Query: 400 tctgtcctggctgccaccttggatgagtg 428
           |||||||||||||||||||||||||||||
Sbjct: 29  tctgtcctggctgccaccttggatgagtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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