BAC Information

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BAC

Clone NameMSMg01-417I02
Chromosome11 (Build37)
Map Location 31,256,640 - 31,257,105
singlet/doubletsinglet
Overlap genenone
Upstream gene4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2
Downstream geneStc2, 2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417I02.T7 (MSMg01no417_i02.b1)MSMg01-417I02.TJ (MSMg01no417_i02.g1)
ACCAG513069AG513070
length749749
length of high quality
(start - end)
537 (73 - 609)466 (82 - 547)
definitionCHROMAT_FILE: MSMg01no417_i02.b1 PHD_FILE: MSMg01no417_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:24 2005CHROMAT_FILE: MSMg01no417_i02.g1 PHD_FILE: MSMg01no417_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCAGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAACAGCTATACAAACAACAGAAAGCCCACATAGTCATAGAA
AATGAATAACTCTCCACTCAATGATTACTTGGTCAGGCAAGAAATAAATA
AAAAAAAATTAAAGACTTTATAGAATTCAATGAAAATGAAGGCACAACAT
ACCAAAACTTATTGGACTGCTGAAAGCAGTACTAAGAGGAAAAATTCATA
CCTCTAAGTCCCTTCATAAAGAAATTGGAGAAATCTCATACTAGGAAGTG
AACAAGCCCAAGAGGGGTATACAGTAGGAAAAAATAAAACTCAGGTTAAA
AATCAATTAGAAACGAAGAAAACTATACAAAGAATCAGCAAAATCAAGAG
CTGATTCTTTGAGAAAAATCAACAAAATAGACAAACCCTTAGCTAAACTA
ACTAAAAGGCACAGAGACAGTATCCAAGTTAATGAAGTCAGAAGTGAAAA
AGGAGGTATCACAACAGAAACTGAAGAAATTAAAAAACCATTAGGTCATA
CTTCAAAATTATGTACTCCACAAACCTGGAAAATATAAATGAAATGGATG
ATTTTCTAGACAGATACCCTGTACTAAAGTTAAATCAAGATCAGGTAATC
TATATAAACAGTCTCATAACACCTAAGGAAATAGATGTAGGCACCATATA
CCCCCCCACCAAAATTGAGCTAAACCCATACTCCAACTATTTTTTTCAN
TTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCCATCCTCAGCCCAG
CCAGCTCTCAAAGCTCACTTTTGTCACCTTCCTTCAGCCTGGGGCTGCAG
CCCCTGCCATCAGCTTAATCACTCAATGGCTTAGGACTGGCTGGCTTGTT
CTCCAGCTCCTCCCCAGCTCTTGGCTACCACTGCAAAGCAAAGCTTGAGC
TGCTCTTCACTCTAGCTTGTGTGGCTACACTGTATGCCAGGCATCCTGGT
GGACACCAAGCAAGCATTTTCCCACCCTGAGCCCCACACTCCTGATTTCT
ATTCCCGTTTGACAGGCAGAGATGCCCAGGTGCCCAGCGAATTGTCTCAG
CAAGTGAAAAGGTTCTTGCTGTCGAATGTCGATGACCTTCCTTGTGGAAG
GAGAGAACTCCCAAAAGCTGTTCTCTGACCTCCACATGTGCACTGTGACA
TGGGGTAGGGAGTGCATACAAACCTGTATATATAGATGAATGAATGGGAG
CTAAAGGGGTCTGCAACCCTATAGATGGAATAACAATATGAATTAACTAC
TACCTCCGGAGCCCGTGTCTTTATCTGCCTAAGGAGCATAAGAAGGTTCA
ACTGCCCTCCTTGGTAAGAAAAGCCCCCTGCGCCTCCTCAACTCTATTGT
CTTATTCCCCGCTATAACTCTTTGTCACAAATTATCACCTTTTTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_i02.g1 MSMg01no417_i02.g1 CHROMAT_FILE:
MSMg01no417_i02.g1 PHD_FILE: MSMg01no417_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:24 2005
         (466 letters)



>mm_chr11_31256554_31257419
          Length = 866

 Score =  901 bits (466), Expect = 0.0
 Identities = 466/466 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgccatcctcagcccagccagctctcaaagctcacttttgtcaccttccttcagcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tctgccatcctcagcccagccagctctcaaagctcacttttgtcaccttccttcagcctg 493

                                                                       
Query: 61  gggctgcagcccctgccatcagcttaatcactcaatggcttaggactggctggcttgttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gggctgcagcccctgccatcagcttaatcactcaatggcttaggactggctggcttgttc 433

                                                                       
Query: 121 tccagctcctccccagctcttggctaccactgcaaagcaaagcttgagctgctcttcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tccagctcctccccagctcttggctaccactgcaaagcaaagcttgagctgctcttcact 373

                                                                       
Query: 181 ctagcttgtgtggctacactgtatgccaggcatcctggtggacaccaagcaagcattttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctagcttgtgtggctacactgtatgccaggcatcctggtggacaccaagcaagcattttc 313

                                                                       
Query: 241 ccaccctgagccccacactcctgatttctattcccgtttgacaggcagagatgcccaggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ccaccctgagccccacactcctgatttctattcccgtttgacaggcagagatgcccaggt 253

                                                                       
Query: 301 gcccagcgaattgtctcagcaagtgaaaaggttcttgctgtcgaatgtcgatgaccttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gcccagcgaattgtctcagcaagtgaaaaggttcttgctgtcgaatgtcgatgaccttcc 193

                                                                       
Query: 361 ttgtggaaggagagaactcccaaaagctgttctctgacctccacatgtgcactgtgacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ttgtggaaggagagaactcccaaaagctgttctctgacctccacatgtgcactgtgacat 133

                                                         
Query: 421 ggggtagggagtgcatacaaacctgtatatatagatgaatgaatgg 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ggggtagggagtgcatacaaacctgtatatatagatgaatgaatgg 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)