BAC Information

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BAC

Clone NameMSMg01-417L12
Chromosome11 (Build37)
Map Location 72,803,259 - 72,803,802
singlet/doubletsinglet
Overlap geneAtp2a3
Upstream geneAipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119
Downstream geneP2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417L12.T7 (MSMg01no417_l12.b1)MSMg01-417L12.TJ (MSMg01no417_l12.g1)
ACCAG513233AG513234
length760749
length of high quality
(start - end)		544 (68 - 611)449 (79 - 527)
definitionCHROMAT_FILE: MSMg01no417_l12.b1 PHD_FILE: MSMg01no417_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:41 2005CHROMAT_FILE: MSMg01no417_l12.g1 PHD_FILE: MSMg01no417_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGCATGGCATTTGTATCCCAGACACAGGGCTCCCCCAAGGGA
ATGAGACATTTTAGCCACGGGGACAAATTTTTCATTTTTAAATTTCTTCA
AGAAAATGTGCTGAGCTCCTGGGTTGCTGTGGTCACCAGGGATGAACGCT
GTCTCTCAAGGAAGACAAAAATGTCCTCTAGCTGTTTCTCAAAGCCACAC
TTCGCAAGAGAGTTTGGCTGTGGGCTGAGTGTGGAGGGAGGGGCTTCCTG
GGGGACCCTCCTGTGCTGGCTGGCCAGAAACTCAGAAGCTCAAGGGTCAT
ACCCACTTCTTCCAGGCTTCTCCCAGGGTCAATGGTGAGCCTGAAAGAGC
CGTCTATGGAGGGACCTGAATGGCCTAGTCCAGCTGCCATCAGCCCCACT
CATGGGCTCTGTGAGTCCAGCCATTCTCTGTTCAAACCTCTCCAGAGAAG
AGGGAGAGGCTCATTGAGGCTTTTAAAAAAAGTATTCAGTTAGCATGAGG
GTGTGGGGGCCTTTATGGAATGGCAGGCATGAGGTTTATTTATAGCCTCC
ACTATTTCCTGGATCAGGGGTCACATTCCAACTAGAAGTGGCCCCCAAAA
GTCCAGAATGCCAAAGCAGGTTCTAACTAGTTGTTGAGCCCATCCCAGGC
CCTCTGTAAATCGCTAGCTTTCTTCCCTGGGCATAAACCCGGCTGGGTTA
TTTCTCTTTG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGAACTTTTCAGAGGGTACA
TAAATATGAGTCCCCTAAGAGGCAGGGTCAGTGGTTGTTAGTCATTTAGG
GAGGTTGGTTGCAGTTTGTTAGTAGCTGTGGTCAAGAAAGACATTAGACT
CAGGAATTTTCCTAATTATTCTCTCCCCTCTATCCTTTTTTCTCTCCTAT
CTACTGATAGGGGGTAAAACTGGGGGAGTTAGGATAAAGAGTGGGAAAAG
GAAGAACCCATAAAGTAGCTAAGACCAGCTACAGTTTGGTGGTGTGTATA
CCTGCGCCATGTGTATGCCTACTGCCCATGAAGGTCAGAAGACTGCATTG
GATCCCCTAGAACTGGTGTTATGAGTGATTGGGAGCTGCCATGCAGGTGC
TAAGAACCAAACCTGGATCTTCTGAAAGAACACGCTGTGTTAATTCTGAG
CCTTGTCTCCAGCCTCCTCAAACTTTCATTGAAAATACTTATTAAACATC
TATTATGTGCTGGGCCTGATGCATTGAATGTCCTGCAGCGGAATAAGCAC
CAGAGGTGTCACTGTTTTGACCTTAGATAGTTTCCTGCATTATATTTGTC
CCCCGTCGCTGCATGCCATTTTTTAACTTTCGTGTACCTATTTCCGTTTT
TTTTGTCCTGTTCTTTTTCTTTCCCCTTTTTTTTCTCACCTTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_l12.b1 MSMg01no417_l12.b1 CHROMAT_FILE:
MSMg01no417_l12.b1 PHD_FILE: MSMg01no417_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:41 2005
         (544 letters)



>mm_chr11_72803059_72804002
          Length = 944

 Score = 1052 bits (544), Expect = 0.0
 Identities = 544/544 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtatcccagacacagggctcccccaagggaatgagacattttagccacggggacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tttgtatcccagacacagggctcccccaagggaatgagacattttagccacggggacaaa 685

                                                                       
Query: 61  tttttcatttttaaatttcttcaagaaaatgtgctgagctcctgggttgctgtggtcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttttcatttttaaatttcttcaagaaaatgtgctgagctcctgggttgctgtggtcacc 625

                                                                       
Query: 121 agggatgaacgctgtctctcaaggaagacaaaaatgtcctctagctgtttctcaaagcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agggatgaacgctgtctctcaaggaagacaaaaatgtcctctagctgtttctcaaagcca 565

                                                                       
Query: 181 cacttcgcaagagagtttggctgtgggctgagtgtggagggaggggcttcctgggggacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cacttcgcaagagagtttggctgtgggctgagtgtggagggaggggcttcctgggggacc 505

                                                                       
Query: 241 ctcctgtgctggctggccagaaactcagaagctcaagggtcatacccacttcttccaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctcctgtgctggctggccagaaactcagaagctcaagggtcatacccacttcttccaggc 445

                                                                       
Query: 301 ttctcccagggtcaatggtgagcctgaaagagccgtctatggagggacctgaatggccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttctcccagggtcaatggtgagcctgaaagagccgtctatggagggacctgaatggccta 385

                                                                       
Query: 361 gtccagctgccatcagccccactcatgggctctgtgagtccagccattctctgttcaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtccagctgccatcagccccactcatgggctctgtgagtccagccattctctgttcaaac 325

                                                                       
Query: 421 ctctccagagaagagggagaggctcattgaggcttttaaaaaaagtattcagttagcatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctctccagagaagagggagaggctcattgaggcttttaaaaaaagtattcagttagcatg 265

                                                                       
Query: 481 agggtgtgggggcctttatggaatggcaggcatgaggtttatttatagcctccactattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agggtgtgggggcctttatggaatggcaggcatgaggtttatttatagcctccactattt 205

               
Query: 541 cctg 544
           ||||
Sbjct: 204 cctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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