BAC Information

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BAC

Clone NameMSMg01-418C13
Chromosome11 (Build37)
Map Location 26,083,353 - 26,083,593
singlet/doubletsinglet
Overlap gene5730522E02Rik
Upstream geneLOC100042328
Downstream geneLOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418C13.T7 (MSMg01no418_c13.b1)MSMg01-418C13.TJ (MSMg01no418_c13.g1)
ACCAG513564AG513565
length764734
length of high quality
(start - end)
244 (72 - 315)246 (75 - 320)
definitionCHROMAT_FILE: MSMg01no418_c13.b1 PHD_FILE: MSMg01no418_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:17 2005CHROMAT_FILE: MSMg01no418_c13.g1 PHD_FILE: MSMg01no418_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTAATTCCTATCCCCACATGGTTGCTCATAACCATCTGTAATGGGAG
TCAGTGCTGTCTTCTGGTGTGTCTGAAGACAGCTGCTACATTGTACTCAT
GTAAATAAAATAAATAAATCTGTTTTTACAAATGTCCCAATAGCACATGC
ACACTATGACTAAAGCAACCAGGAGAACTGACAGTGAAGGTAGGACTGTC
CCTGGTTAGTCAGGTGCACTTCTATGCTGGTAGGTAGGAAAAAAAAACAA
CAACAACAACAACAATATTTTATAGTCTACAAACAAGTCAGAATTGCATT
GCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACATCACA
TCACAGCACATACTGCACAGCACAGCACAGTACAGTACAGCACAGTACAG
CACAGCACAGCACAGTCCATTACCAGCCCATCTCATTACAGTACATACAT
CTTTCTTAGTATACACTGTTTACACTGTACTCTTCATCATTTTCCTGTCC
CTTTCCACTCTATCATATTCATTTCTCCCTTTTTCATCCTCTTTCTATTT
TACCTTTTTCCTTTCTCCTCCTCTTCCCTTCTCCTTTTCCCCTTTACCCT
TCCCTTCTTTTTCTTTTCTTTTCACCCCCTATTCTGTTCCTTCACTTTTT
CACTTTCCTGTCTTTCTCTCCTCTCTTTTCCATTTTTTCTTTCCTTCCTT
TTTCCTTTTTTTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAAGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CCGTCTGGCGGTTCCTCATTTATTTTTACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGTATCATCCTGAGTG
AGGTAACACATTCTCAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTACTTCTTAATCTATGACACCCACGATGTAATATACTATTTCCT
AAACTCTTGATATTTCCCGAATATTGTAATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_c13.b1 MSMg01no418_c13.b1 CHROMAT_FILE:
MSMg01no418_c13.b1 PHD_FILE: MSMg01no418_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:17 2005
         (244 letters)



>mm_chr11_26083150_26083793
          Length = 644

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ttgctcataaccatctgtaatgggagtcagtgctgtcttctggtgtgtctgaagacagct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttgctcataaccatctgtaatgggagtcagtgctgtcttctggtgtgtctgaagacagct 263

                                                                       
Query: 64  gctacattgtactcatgtaaataaaataaataaatctgtttttacaaatgtcccaatagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctacattgtactcatgtaaataaaataaataaatctgtttttacaaatgtcccaatagc 323

                                                                       
Query: 124 acatgcacactatgactaaagcaaccaggagaactgacagtgaaggtaggactgtccctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acatgcacactatgactaaagcaaccaggagaactgacagtgaaggtaggactgtccctg 383

                                                                       
Query: 184 gttagtcaggtgcacttctatgctggtaggtaggaaaaaaaaacaacaacaacaacaaca 243
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 gttagtcaggtgcacttctatgctggtaggtaggaaaaaacaacaacaacaacaacaaca 443

            
Query: 244 a 244
           |
Sbjct: 444 a 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)