Query= MSMg01no418_k03.b1 MSMg01no418_k03.b1 CHROMAT_FILE:
MSMg01no418_k03.b1 PHD_FILE: MSMg01no418_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:53 2005
(271 letters)
>mm_chr11_118509717_118510387
Length = 671
Score = 431 bits (223), Expect = e-125
Identities = 244/251 (97%)
Strand = Plus / Plus
Query: 20 ctctgccacctgcagccctcagggcttggtgtcactggccgggtgtgtggactccagcag 79
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 220 ctctgccacctgcagccctcagggcttggtgtcgctggcagggtgtgtggactccagcag 279
Query: 80 accttaggatagagctgctgactcagccctgcaggctgtggccgcttgccatggtcagct 139
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 280 accttaggatagagctgctgactcagccctgcaggttgtggccacttgccatggtcagct 339
Query: 140 cagcgtctgctcagctggagtgtctggggcaggtgatgacagaacaggacccggtggcca 199
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 340 cagcgtctgctcagctggagtggctggggcaggtgatgacagaacaggacccggtggcca 399
Query: 200 ctggatcttagtgacagaggaggaaatggaagccaggaaagagaggcccacagtcacatg 259
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 400 ctggaccttagtgacagaggaggaaatggaagccaggacagagaggcccacagtcacatg 459
Query: 260 tcctacaggtg 270
|||||||||||
Sbjct: 460 tcctacaggtg 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space: 173444
Effective search space used: 173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no418_k03.g1 MSMg01no418_k03.g1 CHROMAT_FILE:
MSMg01no418_k03.g1 PHD_FILE: MSMg01no418_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:53 2005
(438 letters)
>mm_chr11_118696653_118697489
Length = 837
Score = 717 bits (371), Expect = 0.0
Identities = 424/445 (95%), Gaps = 7/445 (1%)
Strand = Plus / Minus
Query: 1 ttgccctagcttcctttggtgacagactctgatgtagatgtgtaagccaggtcatcacaa 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 743 ttgccctagcttcctttggtgacagactctgatgtagatgtgtaaaccaggtcatcacaa 684
Query: 61 cagtgataaccctaagatagccacctattctgaaatgcagttcctg----c---cttctg 113
|||||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 683 cagtgaaaaccctaagatagccacctattctgaaatgcagttcctgagttctgtcttctg 624
Query: 114 tgtgccactgctaacagacccctgggctgttccctgtcatcctgactctgcaggatgctt 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 623 tgtgccactgctaacagacccctgggctgttccctgtcatcctgactctgcaggctgcgt 564
Query: 174 ttccagacccaacttgagggccagggtatgggaggtaacccagactccagtgtgggagcc 233
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 563 ttccagacccaacttgagggccagggtatgggaggtaactcagactccagtgtgggagcc 504
Query: 234 cagggcttgtctgttcatttcaacctgagagctgccagtgcctgccttgccttacactgt 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cagggcttgtctgttcatttcaacctgagagctgccagtgcctgccttgccttacactgt 444
Query: 294 tgacacagaacaagggtgagaagattggtgcgggcgatctcaaagctccccaagtttttc 353
|||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 443 tgacccagaacgagggtgagaagactggtgtgggcgatctcaaagctccccaagtttttc 384
Query: 354 cactccatggcaaggtggaaggcgctaatgtggacccagcaactctcattccaggctgtt 413
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 383 cactccatggcaaggtggaaggagctaatgtggacccagcaactctcattccaggctgtt 324
Query: 414 atggaaggttttgcttgtgtcctgg 438
|||||| ||| | |||||||||||
Sbjct: 323 atggaaagttacgtttgtgtcctgg 299
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 837
Length adjustment: 9
Effective length of query: 429
Effective length of database: 828
Effective search space: 355212
Effective search space used: 355212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
