Query= MSMg01no418_l23.b1 MSMg01no418_l23.b1 CHROMAT_FILE:
MSMg01no418_l23.b1 PHD_FILE: MSMg01no418_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:02 2005
(452 letters)
>mm_chr11_53282859_53283708
Length = 850
Score = 808 bits (418), Expect = 0.0
Identities = 440/448 (98%), Gaps = 2/448 (0%)
Strand = Plus / Minus
Query: 5 gaattcttgagtgttctcaaaagaaaccaccgattggacaggataaaaactgaggcaaga 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gaattcttgagtgccctcaaaagaaaccaccgattggacaggataaaaactgaggcaaga 591
Query: 65 acgagacaagatcaggctggacccaaggaccagctctggaactgtgactctcaaaaactg 124
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 590 acgagacaagatcaggctggacccaaggaccagctctggaactgtga--ctcaaaaactg 533
Query: 125 tcagggttgagcacggaaatctcgttattcccccttcgaaaaatctggcgcagaaccaag 184
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 532 tcagggttgagcacggaaatctcgttatttccccttcgaaaaatctggcgcagaaccaag 473
Query: 185 gtttgttctagcctgaagatggcagtcgtccctatgcccacccataagccagaaatgctt 244
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 472 gtttgttctagcctaaagatggcagtcgtccctatacccacccataagccagaaatgctt 413
Query: 245 tgaaatacacactttccattggctgagtggacagtgttaggtgtgtttctaagaatatca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tgaaatacacactttccattggctgagtggacagtgttaggtgtgtttctaagaatatca 353
Query: 305 taacagaagcatgatgtttcaaatgggaattgcgtagggcaacaggcagagatcagcagc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 taacagaagcatgatgtttcaaatgggaattgcgtagggcaacaggcagagatcagcagc 293
Query: 365 ttccacgcagaaggctcctccaagagaccttagtgcccggaccctgcccacagggttcaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttccacgcagaaggctcctccaagagaccttagtgcccggaccctgcccacagggttcaa 233
Query: 425 ggcgacaaaaggaaagcataacgttaga 452
||||||| ||||||||||||||||||||
Sbjct: 232 ggcgacacaaggaaagcataacgttaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 850
Length adjustment: 10
Effective length of query: 442
Effective length of database: 840
Effective search space: 371280
Effective search space used: 371280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_l23.g1 MSMg01no418_l23.g1 CHROMAT_FILE:
MSMg01no418_l23.g1 PHD_FILE: MSMg01no418_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:02 2005
(464 letters)
>mm_chr11_53112755_53113618
Length = 864
Score = 690 bits (357), Expect = 0.0
Identities = 415/467 (88%), Gaps = 51/467 (10%)
Strand = Plus / Plus
Query: 1 attagcatgaaaaactaacgctgttaaggaataggtgagcagcctgggtaaggaatgacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagcatgaaaaactaacgctgttaaggaataggtgagcagcctgggtaaggaatgacc 260
Query: 61 caacctaactcaatatccaaaaacgaatgaagggagttaaaacgctatcaagaaaagcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacctaactcaatatccaaaaacgaatgaagggagttaaaacgctatcaagaaaagcat 320
Query: 121 ggactttattcaatttcgttaggtatcctggccacccgaactgcgagctgcctggagaaa 180
||||||||||||
Sbjct: 321 ggactttattca------------------------------------------------ 332
Query: 181 gggcctgccgtgggtactcagactccacatcttccgggcgccaccccgcccccactcacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gggcctgccgtgggtactcagactccacatcttccgggcgccaccccgcccccactcacg 392
Query: 241 tgggactcagagcgcttcccagtcccgaggccacaatcttgcaagttaacttttattaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgggactcagagcgcttcccagtcccgaggccacaatcttgcaagttaacttttattaaa 452
Query: 301 tgctcgccgtgggccgagtttgaacctctattgggttcgacgagctcagcaagccctgga 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 453 tgctcgccgtgggccgagtttgaacctctattggattcgacgagctcagcaagccctgga 512
Query: 361 cctcgtttcagaccgaaccacccaaaccctccccccc---aaaaaaggaggtgagagcgg 417
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 513 cctcgtttcagaccgaaccacccaaaccctccccccccccaaaaaaggaggtgagagcgg 572
Query: 418 tcggtccatcccacggtctcaggcccgccttctctttcagttcctgc 464
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tcggtccatcccacggtctcaggcccgccttctctttcagttcctgc 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
