BAC Information

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BAC

Clone NameMSMg01-418P10
Chromosome11 (Build37)
Map Location 41,653,846 - 41,654,343
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292
Downstream geneGabrg2, Gabra1, Gabra6, Gabrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418P10.T7 (MSMg01no418_p10.b1)MSMg01-418P10.TJ (MSMg01no418_p10.g1)
ACCAG514176AG514177
length751744
length of high quality
(start - end)
300 (48 - 347)574 (73 - 646)
definitionCHROMAT_FILE: MSMg01no418_p10.b1 PHD_FILE: MSMg01no418_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:19 2005CHROMAT_FILE: MSMg01no418_p10.g1 PHD_FILE: MSMg01no418_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTGTTTATCTCTCTACCCCATTTTTTGATTGGGTTGTTTGGG
TTTTGGTGGTTAGCTTCTTGAGTTCTTTATATATTGTAGATATTAGCCCT
CTATTGGATGTGGGGTTAGTGAAGATTTTTTCCCAATCTGTAGGTTGCTA
GTTTGTCTTATTGACTATGTCTTTTGCCTTACAGAAGCTTTCCATTTTCA
TGAGGTACCATTTATGAATTCTTGATCTTAGAGCATGAACCATTGGAGTT
CTGTTTAGGAAATTTCCCACTGTGTCTATGAGTTCAAGGCTCTTTCCCAT
TTTCCTTNCCATTAGATTCAGTATATCTGGTTTTATGTTGAGGTCCTTGA
TCCACTTGGACTGGTTTGGGNGCCAAGGTGACAAATATGGGTGTATTTTC
ATTTTTCTACATACAGAGATCCAGTTAGACCACCCCATTTACTGTATAAG
GTTTCTTTATTCCATTGTATATTTTTTTGACATCTTTGTCAAAGATAAAT
GGCCTTAGGGGTGGGATTTTTTTTTTGGTGCCTTCAATTCTATTCTTTGG
AATCACCCATCTTGTCTCTGTATCACTACCCTGCCGGGTTTTTTTGTTGG
TCTGTTTGTTTTGGTTTTTATTCACTATTGGCGGAGCCATGAAAATTTTT
GATCTTGGTTTGGGTGATTCCCCCCCGCGCCTCTTTATGTGATGATTTTT
N
ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGGCTTTTATGCTTCTTGATCAATTGT
CATAGTCCTCTCAGTGGGATGTCATGGTTACATGTTCCAGATCAGATATT
TTGGGAGGGAGCTGGCCCCAAGCCTGCCTTTCTTAATTCTGAGATTCCCT
GGGGTTTGGGCCTGTTCAACCTTACCAGTTATTCCCTTGTGGCATAGTCC
AATTGCCCCACAGACTCACATAGCAGTACATAATTAATTTAGATAATCAA
TTTTACCTAGTACCCATTCTTAGTCCTTGTCCAGAGGACACACTGTTAAC
AGTAGAAACATTTCTTTAGTCACCTCCCATGTATGACAGAGTCTCAGAAT
CTTCTGGTTTTGATGATCCTGGTAATTCTGGAGGGAGCTGGTCAAATATT
TTCTAGATAGTCTTTATTGATTGATGATTTTTTTTTCTCATAACCGAGCT
TGGATTGTGAGTTTTATGACAAAACTCACATTGTTAATATCACTTTACTT
AGGGTCTCGTCAGCATTTCTTGTGCTTTTTTCCAGCATTTAAAGAAATAT
TCATGTGAGTTTTTTCTTTGATTTTTTTTTTATATAGTGGATTACATTCA
TCAATTTCCATATATTGAACCATTCCTGAAACCCTGGAATGAAGCCTAAT
TGATCATGGTGAATGATCATTTTTGATGTGGTCTTGGATTCAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_p10.g1 MSMg01no418_p10.g1 CHROMAT_FILE:
MSMg01no418_p10.g1 PHD_FILE: MSMg01no418_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:19 2005
         (574 letters)



>mm_chr11_41653646_41654615
          Length = 970

 Score =  855 bits (442), Expect = 0.0
 Identities = 486/502 (96%), Gaps = 4/502 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggcttttatgcttcttgatcaattgtcatagtcctctcagtgggatgtcatggttaca 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggcttttatgctacttgatcaattgtcatagtcctctcagtgggatgtcatggttaca 260

                                                                       
Query: 61  tgttccagatcagatattttgggagggagctggccccaagcctgcctttcttaattctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttccagatcagatattttgggagggagctggccccaagcctgcctttcttaattctga 320

                                                                       
Query: 121 gattccctggggtttgggcctgttcaaccttaccagttattcccttgtggcatagtccaa 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gattccctggggtttgggcctgttcaaccctaccagttattcccttgtggcatagtccaa 380

                                                                       
Query: 181 ttgccccacagactcacatagcagtacataattaatttagataatcaattttacctagta 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 ttgccccacagactcacatagcagtacataattaatttatataatcaattttacctagta 440

                                                                       
Query: 241 cccattcttagtccttgtccagaggacacactgttaacagtagaaacatttctttagtca 300
           |||||||  ||||||||||||||||||| |||   |||||||||||||||||||||||||
Sbjct: 441 cccattcagagtccttgtccagaggacatact---aacagtagaaacatttctttagtca 497

                                                                       
Query: 301 cctcccatgtatgacagagtctcagaatcttctggttttgatgatcctggtaattctgga 360
           |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 498 cctcccatgtatgacagattctgagactcttctggttttgatgatcctggtaattctgga 557

                                                                       
Query: 361 gggagctggtcaaatattttctagatagtctttattgattgatgatttttttttctcata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 558 gggagctggtcaaatattttctagatagtctttattgattgatgatttttttt-ctcata 616

                                                                       
Query: 421 accgagcttggattgtgagttttatgacaaaactcacattgttaatatcactttacttag 480
           ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 617 accaagcttggattgtgagttttatgacaaaactcacattgttaatgtcactttacttag 676

                                 
Query: 481 ggtctcgtcagcatttcttgtg 502
           |||||| |||||||||||||||
Sbjct: 677 ggtctcatcagcatttcttgtg 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 970
Length adjustment: 10
Effective length of query: 564
Effective length of database: 960
Effective search space:   541440
Effective search space used:   541440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)