BAC Information

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BAC

Clone NameMSMg01-419C08
Chromosome11 (Build37)
Map Location 49,955,965 - 50,111,889
singlet/doubletdoublet
Overlap geneTbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx
Upstream geneOlfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696
Downstream gene1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419C08.T7 (MSMg01no419_c08.b1)MSMg01-419C08.TJ (MSMg01no419_c08.g1)
ACCAG514316AG514317
length761762
length of high quality
(start - end)
375 (78 - 452)160 (149 - 308)
definitionCHROMAT_FILE: MSMg01no419_c08.b1 PHD_FILE: MSMg01no419_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:33 2005CHROMAT_FILE: MSMg01no419_c08.g1 PHD_FILE: MSMg01no419_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,955,965 - 49,956,339)(50,111,734 - 50,111,889)
sequence
NCCTCACTATAAATTGCGGCCGCTAAAAGAATCACTACTTTCTAACACAC
CGCGGAATCACTGTATTCGCAAACCATAGACCAGGGAAGATTGGACTGAG
TTTCTGAGCTCTTCTTTGCACATACTTGAGTTCAAGGCAGGACCTGGTCG
GCTTATAGCTACAGGGAAACAGGCAAAGCCAAGCTGTTCCTCTTCTGTTG
GGTAGTAGTAATGAAGCAGCCTTAGCACGTGTCTCCTAAATGCTTGCCCT
AACAAACACATCAGAAGAACACTCAAGCTCAGGACGACGACCACACTAGC
TTCAAACTCATAGCCATCTGTCGGCTTTGCCTCCTGAGTGCCACCATGCC
CAGTTGCCCTAGTATCCTCTTAAAGGCATGTCCCCAATGACAGGATGACC
TCCCACTTGGCCCCCCCTCTTATGGGTCCACCACATCAACTCACAATAAT
GCTGTGACAAGGATGAGATCTCTCAGCCTCTGGGGATCACAAGACAGTCC
ATGGAAATTATGAAACATAAAATTGGAGGCGGCTGAAGAAGGAAAAACAC
TCACTTTACAAGCACCAGGACCGAGATTCAATTCCCCTATACCCATGGAA
AAGCTGAAGGGGCCGCGGGCATCCCTCCGGAAAACGCAACACCCCGAAGG
GGGTAACATCCCCTTTGGGTTTGTCTTTCCTTGGCCCTCGTGTCTTCCAA
CTGTCCCCCACTTTTCTACGTGGAAAAGGGAAAAACAACCCGCCAAAGCC
CCTCCCCCCCT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTCTGTAGACCACGCTGGCCATTGAACTCA
CAAATCCGCCTGTCTCCTAACTGCTGGCATTAAAGGCGTGGGTCACCCAC
CACTGCTCGGCTTTTCCTAATTTCTTAATGTGCATAGTTTGACTCCTTTG
GAAATAAAGGAGTTAGTTGTATGAATATGAAGCAATCAGTCGAGTCTGTA
TTTGGTGTCATAAACCAGTTCTCTGAATTACTGTTGTTTGGTATTTCAGC
CAGGCGCAGTGCTGCATAAGTTGTATGCAGCTGAAGAGCGCCCATGGCTT
TGGGTGTTCTACATTCTGACTGTAGCTTTGCCAGTGTTCCTTGTGATCCT
CTTCTGTTGCCCCCCCCCGGTAGGAATGTTCTAACTAACTATTTGTATCC
ACTGATTTCTTCTTTACTGTTAGTTTTGCAATTACTGTTTTCGTGTCCCA
TTGCCCCTCTTCGTTCCCACCCGATGACCTCCCTTCATTCCTTTTACTCG
TTTTTTCTTTTTATTCCTCTCCTCAACATTTACAGCTTTTTTCCTTTTTC
TTTATACCCCTATTCCATTCTTCTATACTATATCCCTTCTTTAAACAACA
CTTTCTTCTCCTTTTTTTATTTTTTTCACTCTCTCCCCATTACCTTTCTA
GTTCCCCCTCTTCTCTATATTTCATTTTTTCTTTTATTTCGCACTTATAT
TTTTTCAATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_c08.b1 MSMg01no419_c08.b1 CHROMAT_FILE:
MSMg01no419_c08.b1 PHD_FILE: MSMg01no419_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:33 2005
         (375 letters)



>mm_chr11_49955765_49956539
          Length = 775

 Score =  694 bits (359), Expect = 0.0
 Identities = 371/375 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaccagggaagattggactgagtttctgagctcttctttgcacatacttgagttcaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaccagggaagattggactgagtttctgagctcttctttgcacatacttgagttcaagg 260

                                                                       
Query: 61  caggacctggtcggcttatagctacagggaaacaggcaaagccaagctgttcctcttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggacctggtcggcttatagctacagggaaacaggcaaagccaagctgttcctcttctg 320

                                                                       
Query: 121 ttgggtagtagtaatgaagcagccttagcacgtgtctcctaaatgcttgccctaacaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgggtagtagtaatgaagcagccttagcacgtgtctcctaaatgcttgccctaacaaac 380

                                                                       
Query: 181 acatcagaagaacactcaagctcaggacgacgaccacactagcttcaaactcatagccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatcagaagaacactcaagctcaggacgacgaccacactagcttcaaactcatagccat 440

                                                                       
Query: 241 ctgtcggctttgcctcctgagtgccaccatgcccagttgccctagtatcctcttaaaggc 300
           ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcctgccttgcctcctgagtgccaccatgcccagttgccctagtatcctcttaaaggc 500

                                                                       
Query: 301 atgtccccaatgacaggatgacctcccacttggccccccctcttatgggtccaccacatc 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtccccaatgacaggatgtcctcccacttggccccccctcttatgggtccaccacatc 560

                          
Query: 361 aactcacaataatgc 375
           |||||||||||||||
Sbjct: 561 aactcacaataatgc 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no419_c08.g1 MSMg01no419_c08.g1 CHROMAT_FILE:
MSMg01no419_c08.g1 PHD_FILE: MSMg01no419_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:33 2005
         (160 letters)



>mm_chr11_50111534_50112093
          Length = 560

 Score =  302 bits (156), Expect = 8e-87
 Identities = 156/156 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   accactgctcggcttttcctaatttcttaatgtgcatagtttgactcctttggaaataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 accactgctcggcttttcctaatttcttaatgtgcatagtttgactcctttggaaataaa 297

                                                                       
Query: 61  ggagttagttgtatgaatatgaagcaatcagtcgagtctgtatttggtgtcataaaccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ggagttagttgtatgaatatgaagcaatcagtcgagtctgtatttggtgtcataaaccag 237

                                               
Query: 121 ttctctgaattactgttgtttggtatttcagccagg 156
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttctctgaattactgttgtttggtatttcagccagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 560
Length adjustment: 8
Effective length of query: 152
Effective length of database: 552
Effective search space:    83904
Effective search space used:    83904
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)