BAC Information

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BAC

Clone NameMSMg01-419H21
Chromosome11 (Build37)
Map Location 91,029,993 - 91,030,098
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
Downstream geneEG664976, Kif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419H21.T7 (MSMg01no419_h21.b1)MSMg01-419H21.TJ (MSMg01no419_h21.g1)
ACCAG514581AG514582
length742768
length of high quality
(start - end)
---108 (211 - 318)
definitionCHROMAT_FILE: MSMg01no419_h21.b1 PHD_FILE: MSMg01no419_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:03 2005CHROMAT_FILE: MSMg01no419_h21.g1 PHD_FILE: MSMg01no419_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCTATAATTTGCGGGCGCTTATAGATCACTATATCGCCAGGATGCG
CGGGAATCCCGAATTTCCCTCCCTAAAATCAAAACCCCCTTAAAAATGGG
GCTCACAGCTGAACAAAGAATTCTCTCTTGAGGAAATTCCAATGGGTGAG
AAGCACCTGAAAAAATGTCAGACATCCCTAAACATCACGGGAATGGACAT
CCCAACAACCCTGAGATATCCCCTCCCACCCGTCCAAAAGGGTTAGAACC
AATTTTTCATGTGACTGCACATGCTGTCGAAGATGTGGATAAAGAGGATC
ACTCCTCCATTGTTGGTGTGTTTTCAAGCTTGCACAACCACTCTGGAAAT
CAGTCTGGTAGTTCCTCAAAAAATTGCACTTACTACTACCAGAGGATCCT
GCAATACCTCTCCTGGGCATATATCCACAAGATGCCCCAACTGGTAACAA
CGACACATGCTCCACTATGTTCATAGCAACCTTATTTATAATATCCAAAA
GCTGGAAAGAACCCACATGCCCCTCAACAGAGGAATGGATACAGAGNATG
TGTTACATTTACTCCATGAAGGACTACTTAAGCATTAAAAAGAATGAGTT
TATGAAATTCCTTGGGAAATGGATGAACCCGTAGGGCCCCCTCCTGGATG
TAGGTACCTCGTCACCAGAAAACTCCCCGATATTGTCTCCTCGATAAGTG
GAGTTTATCCAAAAACTTTGTTTTCCCCCAATAAGAAAAATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGAAGCAGCCATCACCTTCAAGCGGCACTTCTAGAA
GGGACTCATTTTTGTCAGTCTGATCATAATCTCAAAGGGTCAGAAAGATT
GGAATCAAATGTTCAAACACATGAGCCTGTACTGGAGATGTCTCTTCCAA
ACTTTAAGTATTACTTCACTAATTCCACTGGTATAATCATTTCTTTTTTT
TTTTTAGGCATTTACCTATTTTGTATACTCAAACGGAACACACACACATA
TATGGAGAGAGACAGATAGATGGAAGTAGATGTCTTAGTTTTGTATTGCT
ATGATAAAGCACCATGACCATGGGAATTTATAAAAAAAAAGAAATTATTT
TGGCTTATGATTTCAGAGGGTTAAAGACCAAGATGGCATAGTGAATGAAC
AACTGAGAGACACATCTTGATCTACAACTCTGTGCGTGTGTGAGCGTGCG
GGTGTATGATAAATACCGGCTCACACTTATCTCATTTTCTTATATGGCCC
AAACCACCTACTGGAAAAACTGCCACGCACAGTGAAGTGAAATCCCTGAA
ATCATTGTCAAACCCCCCGGCTCCTCAAAATTGGCCCATTTAAAAAAAAT
TGGGAATTTCCCCAAAAATTTCCTCTACTCGTGACAGGTTAACCAAAAAA
ACTTTTTTTTTAAACCCCCGCGTGTGTTTTTTTTTATACATTTCTCTCTC
CTCCTTTTTCCTCTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_h21.g1 MSMg01no419_h21.g1 CHROMAT_FILE:
MSMg01no419_h21.g1 PHD_FILE: MSMg01no419_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:03 2005
         (108 letters)



>mm_chr11_91029793_91030300
          Length = 508

 Score =  190 bits (98), Expect = 3e-53
 Identities = 104/106 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacttcactaattccactggtataatcatttcttttttttttttaggcatttacctatt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 306 ttacttcactaattccactggtataatcatttcttttttttttttaagcatttacgtatt 247

                                                         
Query: 61  ttgtatactcaaacggaacacacacacatatatggagagagacaga 106
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttgtatactcaaacggaacacacacacatatatggagagagacaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 508
Length adjustment: 8
Effective length of query: 100
Effective length of database: 500
Effective search space:    50000
Effective search space used:    50000
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)