BAC Information

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BAC

Clone NameMSMg01-419I20
Chromosome11 (Build37)
Map Location 64,429,921 - 64,430,435
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik, EG544785, Hs3st3a1
Downstream geneLOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419I20.T7 (MSMg01no419_i20.b1)MSMg01-419I20.TJ (MSMg01no419_i20.g1)
ACCAG514627AG514628
length796773
length of high quality
(start - end)
336 (75 - 410)515 (63 - 577)
definitionCHROMAT_FILE: MSMg01no419_i20.b1 PHD_FILE: MSMg01no419_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:08 2005CHROMAT_FILE: MSMg01no419_i20.g1 PHD_FILE: MSMg01no419_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAAATTTTTAATTTGGGGGCGGTAAAAGAATCACTATTTTCCACAGG
AGCGCGGAATTCTCACCTGTTCAATACCGAATGGCAGAGAAACACCTGAA
AAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCC
TGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGT
GACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGT
TCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCAGCAATACCTCTC
CTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTC
CACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGGAAGAAC
CTAGATGCCCCTTCACAGAGAAATGGATACNGAAAAGTGGGACATCTACC
CAATGGAGGACTACTCCGCTTTTATAAAGAAGGAATTTTTGAAATTTCTT
ACCAAATGGAGGGCCCGGGGGGCCCCCTCTTGTTGGGGGGAACCTTTCCC
AAAAAACTCCCCAAAATGTCTCCCGGGTAAGGGGTTTAATCCCCCCCCTA
GAACCCAAAAAAAAAATATTTTTTATCCCCGAACTTCAAAAAAAAAATAA
GAGGGGGGTATTCTCCTCTTTTTTTGACANAACCCTGGAGGGTTAAAAAA
ATTTTNCTAAAAAAAAGAAGCCTTATATCTTTTTCCTTCCCCCCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCTATGAAGACACAGTAGGAAAGATTTGGAAGTAGCAT
GCTAGTGTGGGCATCCAGGGAAGGGGAAGGCACTGATAATATCTTAGAAA
AGTACAGTGAGTATAGACATGAGAAGCCTTGGGTAGGGATTTCCAATATT
CCCTATGCAAATCAGAGTTCTCACCTGCACTTGCATTGCTTCCATCTTGT
CCTTGTAGACCTATGAAGAATGATGCAAAGGGACACTCTGGTTAAAATGC
AAAGTGAGGAATTTCCTCCAAGGAGGTCACAGTAATGGCTGGCAAAGGAC
AAGCTCTGCTTGTATGAGTTTCCCAGAGGAAGCTGTAGCTCAGCCTCTGT
TGGTCCAGCATCACAAAGGAGCAGAAGACCATGCCGCTAGGTCAGGTGTC
TCAGGATTCCAGAAGTTCTACAAAGCACAAGTCTCATACAGCTAGATTTA
GTGACACTGGACTCCAGCTAAGACACAGCCACTAGGTGAACTGCACAAGA
AGCAGAGCACCTGTTCCAGCCCTACCCCTTTTCTCCTTGGAGATNAGACA
CAGCTAGAGTATTCCTCATCTGAAATCTGGACATCCCAAGGCTCTAAAAT
CTAACGCCCTTTTGGTGGTGACACCATAACTAACCCAAAAAAAAAACCCC
CCCCTGGCCCCGGGAGGGAGAATCCTGCCCAAAAAAGAAAACCCCAAGAG
CTTTTTTTAAATTTCCCCCGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_i20.g1 MSMg01no419_i20.g1 CHROMAT_FILE:
MSMg01no419_i20.g1 PHD_FILE: MSMg01no419_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:08 2005
         (515 letters)



>mm_chr11_64429721_64430635
          Length = 915

 Score =  903 bits (467), Expect = 0.0
 Identities = 503/515 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatgaagacacagtaggaaagatttggaagtagcatgctagtgtgggcatccagggaa 60
           |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 tctatggagacacagtaggaaagattgggaagtagcatgctagtgtgggcatccagggaa 260

                                                                       
Query: 61  ggggaaggcactgataatatcttagaaaagtacagtgagtatagacatgagaagccttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggaaggcactgataatatcttagaaaagtacagtgagtatagacatgagaagccttgg 320

                                                                       
Query: 121 gtagggatttccaatattccctatgcaaatcagagttctcacctgcacttgcattgcttc 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaggaatttccaatattccctatgcaaatcagagttctcacctgcacttgcattgcttc 380

                                                                       
Query: 181 catcttgtccttgtagacctatgaagaatgatgcaaagggacactctggttaaaatgcaa 240
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 catcttgtccttgtagagctatgaagaatgatgcaaacggacactctggttaaaatgcaa 440

                                                                       
Query: 241 agtgaggaatttcctccaaggaggtcacagtaatggctggcaaaggacaagctctgcttg 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgaggaaattcctccaaggaggtcacagtaatggctggcaaaggacaagctctgcttg 500

                                                                       
Query: 301 tatgagtttcccagaggaagctgtagctcagcctctgttggtccagcatcacaaaggagc 360
           ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 501 tatgagtttcccagaggaagctgtagcgcagcctctgttgctccagcatcacaaaggagc 560

                                                                       
Query: 361 agaagaccatgccgctaggtcaggtgtctcaggattccagaagttctacaaagcacaagt 420
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 561 agaagaccatgccactaggtcaggtgtctcgggattccagaagttctacaaagcacaggt 620

                                                                       
Query: 421 ctcatacagctagatttagtgacactggactccagctaagacacagccactaggtgaact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcatacagctagatttagtgacactggactccagctaagacacagccactaggtgaact 680

                                              
Query: 481 gcacaagaagcagagcacctgttccagccctaccc 515
           |||||||||||||||||||||| ||||||||||||
Sbjct: 681 gcacaagaagcagagcacctgtcccagccctaccc 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)