BAC Information

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BAC

Clone NameMSMg01-419K17
Chromosome11 (Build37)
Map Location 88,094,982 - 88,095,353
singlet/doubletsinglet
Overlap genenone
Upstream genePpm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23
Downstream gene1700106J16Rik, LOC668793, Msi2, LOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419K17.T7 (MSMg01no419_k17.b1)MSMg01-419K17.TJ (MSMg01no419_k17.g1)
ACCAG514716AG514717
length767768
length of high quality
(start - end)
318 (152 - 469)463 (68 - 530)
definitionCHROMAT_FILE: MSMg01no419_k17.b1 PHD_FILE: MSMg01no419_k17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:17 2005CHROMAT_FILE: MSMg01no419_k17.g1 PHD_FILE: MSMg01no419_k17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAACTCTAAATTTGGGGCGGTATAGGACTCCTATTTTCTCAAGATCCGC
GGAATCCGATATTTCTTAATCTTAAGAGTTGCATTCTGCCGGGCAGTGGT
GGCGCACGCCTTTTATCCCCGTACTCCGAAGGGAGAAGCCGGCCGAATTC
TGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGG
CTGTACAGAGAAACCCTGTCTCGGGGGAAAAAAAAAAAAGAGTTGCATTC
TTTATATGCAAAGTTTCCTGTTTTTTTTTTTTTTTAAATAGAATCAAAGT
AGTTTAATTATAGAAAACAATTATTTTTAATTTGTCACTCCCAAGAATGG
ATCAAATCACTGTTATTTGTTAGAGTGTTTGATTTTTTAAAAAAATTGCT
GTTGGAGGTTGCTGACTTGACTTTCATAGACAGTATTAAATGAAACTAGG
CATAGTGGCAGCGGCCTTTAATCCCAGCACTCATTGGGCATATGTGGGTG
GATCCCTGGGAGTTTGAGATAAGTCTGGTCTACACAGGGAATTTCAGAAC
AACCCGCGTTATGTAGTTGAAATCCCGCCTCACCAAAAATAATTTGGATT
TTCGTTTGGGATTAAAACAGATCCCCGAATTTTTTGATGGCCCCCAAAAT
TTCTTTGGCCCCTTGTACCCCGGGGTAAACACACTTTGAAGGTCTTTTTC
AAAGACTGGGGTTTGTTCCTCCACCCCCCCCCCGTGGTTTCCCCCCTCTC
TGTTTTCTCTTTCTCCG
AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAAATGTTTTTCAAAACTTAAATACACCTTTTTA
AAGAGAAATTAAAAAAAAAAGCCAGTAACCAGAAAGAAACATTCAAAGGA
CCCCCTAGTCTTCCTAAAGGGAGAAAATTTGGAAATTTTTCCAGAAAGCT
AAGCTAAAAAGGCCCAATCACTGCCAAGTATGAGGTGGTTGTGATAATTA
ATTGGCACTGTCAACTTGTTTGGATGCACAGTCGCCATGGAAACACACTT
CTGAGCATGTCTGTGATGGTGTATCCAGAAAAGTTATCCGGCTTCAGCCT
GAGTGTGGGGCAGTGCGAATCTGCATGCTGGGGTCCCAGACTAACGACAG
AGAGAACTTAAAGCAGGCATTCATCTCTTTCTGCTTCTTGACTTAGGATG
CTTCCGTCAGTCTCCTGTCCCAGGCCTTCATTATGGTGAGGGACCGAATC
CCTCTCAGCTGTGAGCTGAAACAAAACCTTCATCCCTTAAGTCACTATGG
GGTATATTGGTTTGCACAACCACTAAAGTACTTATACAACCTTGTTGATT
TCCCTGAAACCGGGGAGTTACTCCCCCTTCTCCCCGGAAGGACTAAGGAA
ATCCTCTTGGGGTGCCTTCCATAAAACCCCCCCACTCCAATGGGGTCTGG
GCCCCCCTAAAGTGGGACCCTTTATAAATTTCCTGCTTCTTGGGGCGTCC
TTCATTCCAATTATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_k17.g1 MSMg01no419_k17.g1 CHROMAT_FILE:
MSMg01no419_k17.g1 PHD_FILE: MSMg01no419_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:17 2005
         (463 letters)



>mm_chr11_88094982_88095844
          Length = 863

 Score =  719 bits (372), Expect = 0.0
 Identities = 372/372 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatgtttttcaaaacttaaatacacctttttaaagagaaattaaaaaaaaaagccagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aaatgtttttcaaaacttaaatacacctttttaaagagaaattaaaaaaaaaagccagta 313

                                                                       
Query: 61  accagaaagaaacattcaaaggaccccctagtcttcctaaagggagaaaatttggaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 accagaaagaaacattcaaaggaccccctagtcttcctaaagggagaaaatttggaaatt 253

                                                                       
Query: 121 tttccagaaagctaagctaaaaaggcccaatcactgccaagtatgaggtggttgtgataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tttccagaaagctaagctaaaaaggcccaatcactgccaagtatgaggtggttgtgataa 193

                                                                       
Query: 181 ttaattggcactgtcaacttgtttggatgcacagtcgccatggaaacacacttctgagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ttaattggcactgtcaacttgtttggatgcacagtcgccatggaaacacacttctgagca 133

                                                                       
Query: 241 tgtctgtgatggtgtatccagaaaagttatccggcttcagcctgagtgtggggcagtgcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tgtctgtgatggtgtatccagaaaagttatccggcttcagcctgagtgtggggcagtgcg 73

                                                                       
Query: 301 aatctgcatgctggggtcccagactaacgacagagagaacttaaagcaggcattcatctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  aatctgcatgctggggtcccagactaacgacagagagaacttaaagcaggcattcatctc 13

                       
Query: 361 tttctgcttctt 372
           ||||||||||||
Sbjct: 12  tttctgcttctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)