BAC Information

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BAC

Clone NameMSMg01-419O02
Chromosome11 (Build37)
Map Location 98,858,421 - 98,858,945
singlet/doubletsinglet
Overlap geneTop2a
Upstream geneCacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1
Downstream geneIgfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419O02.T7 (MSMg01no419_o02.b1)MSMg01-419O02.TJ (MSMg01no419_o02.g1)
ACCAG514877AG514878
length600746
length of high quality
(start - end)		221 (105 - 325)525 (70 - 594)
definitionCHROMAT_FILE: MSMg01no419_o02.b1 PHD_FILE: MSMg01no419_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:33 2005CHROMAT_FILE: MSMg01no419_o02.g1 PHD_FILE: MSMg01no419_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTTTTTCTCTCTAAAATTGCGGGCGGTAAAAGAATCACAATCAAAAG
AGGATCCGNGGAATTCTTTCTCCCTTTAAGGAAGATTTGCCAATCCTTCT
TAGATTATTCCATAAATAGAAATATAAGGAACACTGACCAATTGAGTTTG
TTGAAGCCAGTATAATCCTGGTATCAGAACCAGGTAAAGACATAATTAAA
AACAACAGATCATCTTCTCAGATGAATATAAATGCAGAAAAATCTCAGCA
AACCAAATTCAGGAACACATGAAGATTATACATCATAACCAAGTGCCTTC
ATCCCAGAAGTGCAAGTTTGGTGTTTTATGTGTAAATTAATGAATATAAT
ATACCATATAAATAAGCTGAAGGACAGTGAATTCTCAAAGAAGTTGGGGA
AAGTATCTCATTCATAATAGAATTGCTGGCCAGATTTGTCTTGTTTCTCT
TTTTCTTTAAAAAAGCAGCTTCTTACTGCTGTCTCTAAATAAGGAAGTGC
CCTGTATCATCATATACTATTTGAAGTCTGTAAAAAAAGGAAGCAAGCTT
ATGGCCTGGGAACACTTGTAAAAAAAACAGCAATTAGAGTCCGTCCCCAC


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTAGTTGAAATCTAAAATAGCTCCCCTCCC
CTTTCCAGGAAGTCCTGCTTGGTTTTCCTTGGCTTCAACAGCCTACAGAA
GAGAGAGGAGTAAACTGATAACTGTGACAGCTTTATAGTTCCCGAGACTG
CCTTTACAGTCTGAGCAAACATGGGCAACAGAAAGAGCCCAGGAGGAACT
CCTAGTGACCCAGACCTCAGCTCAGACATGTGTTCTCAGGGAACTGATGT
TTAGACATTTGTATCACATTATTTACTGGAAATACGTCATACACTTGTGG
AATGGAATAACCAAACCATATTATTATGTAGGGCAGGAACTGCATCGCTT
CCTACTCGTGCTGCTGTGCCTTCAGCCCCATTACAGTGTGTGAGGAATGA
GGAGGAAACCAGAGGATAGCAGGATAGTTAGTTTCTGATTGAGTGCTCTG
ACTTAGCGTGTGCAGGACCTTGCCATTAAGCCTGACAACCTGAGTTTGAT
TTCCCCAGCACCACCATATGGCAGAGAGAGAACCAACTCCCTTAAGCTGT
CTTCTGACCTCCACTCAGTGTGTGTGTGCGCGCACACAAGCGTAATAATA
TAATACTTTTCCTGCTGGGCAGTGGTGGCTTCCACCCTTTATNCCCACGC
ACTTTGGGAGGCATAAGCATGGCGAATTTCCTGAGTTCCACGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_o02.g1 MSMg01no419_o02.g1 CHROMAT_FILE:
MSMg01no419_o02.g1 PHD_FILE: MSMg01no419_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:33 2005
         (525 letters)



>mm_chr11_98858317_98859241
          Length = 925

 Score = 1015 bits (525), Expect = 0.0
 Identities = 525/525 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttagttgaaatctaaaatagctcccctcccctttccaggaagtcctgcttggttttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 cttagttgaaatctaaaatagctcccctcccctttccaggaagtcctgcttggttttcct 570

                                                                       
Query: 61  tggcttcaacagcctacagaagagagaggagtaaactgataactgtgacagctttatagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tggcttcaacagcctacagaagagagaggagtaaactgataactgtgacagctttatagt 510

                                                                       
Query: 121 tcccgagactgcctttacagtctgagcaaacatgggcaacagaaagagcccaggaggaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tcccgagactgcctttacagtctgagcaaacatgggcaacagaaagagcccaggaggaac 450

                                                                       
Query: 181 tcctagtgacccagacctcagctcagacatgtgttctcagggaactgatgtttagacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tcctagtgacccagacctcagctcagacatgtgttctcagggaactgatgtttagacatt 390

                                                                       
Query: 241 tgtatcacattatttactggaaatacgtcatacacttgtggaatggaataaccaaaccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgtatcacattatttactggaaatacgtcatacacttgtggaatggaataaccaaaccat 330

                                                                       
Query: 301 attattatgtagggcaggaactgcatcgcttcctactcgtgctgctgtgccttcagcccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 attattatgtagggcaggaactgcatcgcttcctactcgtgctgctgtgccttcagcccc 270

                                                                       
Query: 361 attacagtgtgtgaggaatgaggaggaaaccagaggatagcaggatagttagtttctgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 attacagtgtgtgaggaatgaggaggaaaccagaggatagcaggatagttagtttctgat 210

                                                                       
Query: 421 tgagtgctctgacttagcgtgtgcaggaccttgccattaagcctgacaacctgagtttga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tgagtgctctgacttagcgtgtgcaggaccttgccattaagcctgacaacctgagtttga 150

                                                        
Query: 481 tttccccagcaccaccatatggcagagagagaaccaactccctta 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tttccccagcaccaccatatggcagagagagaaccaactccctta 105


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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