BAC Information

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BAC

Clone NameMSMg01-420F09
Chromosome11 (Build37)
Map Location 36,079,730 - 36,109,615
singlet/doubletdoublet
Overlap geneOdz2
Upstream geneSlit3, LOC100039006, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420F09.T7 (MSMg01no420_f09.b1)MSMg01-420F09.TJ (MSMg01no420_f09.g1)
ACCAG515225AG515226
length711746
length of high quality
(start - end)		229 (333 - 561)550 (70 - 619)
definitionCHROMAT_FILE: MSMg01no420_f09.b1 PHD_FILE: MSMg01no420_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:09 2005CHROMAT_FILE: MSMg01no420_f09.g1 PHD_FILE: MSMg01no420_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,109,387 - 36,109,615)(36,079,730 - 36,080,279)
sequence
TTTTTTTTCTAAAATTGTGGGGCGATAAGAGTATTATTCTCAGAGAGGAG
CGGGAATTTCGTTCTTCCAGAGAGTCTCAAAAATAGGGAAAAAGATGCGA
CTCCTGTATTACCCTCATACCCCCACACTCATACACCAATAAGGAAAGCT
GTTCAAATATAGCAGATGACCTCATGGACATCACATAAATTTCTATATGC
TCTCTATAGATGTTAATTCCTTTAGAGCACCATGCATGTAAATTTCCACA
ACTGAAGTCAGTTTACCTATGTGCTTTAATAAGCAGGCATTCTACCAAGT
GGGTCATACCCCCAATGTTTTATATTCATAGCATAGTCACAAAACTTACG
TACATGATAGAGGACCACAGTGCAAGGCAGCCTGTACAATAAATCACCGC
CCTCCATCTTCCTCCTGTATAGAATCAAGTTCCGACATGCTTCCTGCCTG
CCGTCTTCTATCACCTGTCTAGCCCTTCTCTACAGAGAGAGCCAAGGTCG
GGAATCTTCCGACTCTGCAGCTTCCTGGGAAGTGTCAGAAGTCAGCTTCT
CTTGTCTAAAACAGTAGCGACATCTTGGTGACAGAGTCCAACTTTCCCTC
TGTGTTTTGCTGAGACGAACTCCTTCACATCTGTCTGTGTAGCAGGTGAC
CGAGGAGAATCACTAACCAGTGTAGAACTTCCCCGATTCTGAAATCCCCA
AATACTGATTT

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAAGCTCCCTGTGGAATGCAGAGAGACTGT
GGGCCTGGCTACTACTCGAAGAGACCAATCAAAAGTACTAGCGCACAGTA
TGGCTCTGAGGGAGAGCATTTGCCTACCACAGGGTCAATCCCCAGTGTCA
TGGGAAACATTTATTAAAAAAGTCTTTTGTGAGTTGTAGATGTGATGGCT
ACTGGAGTGATAACTGCCTCAGAGACAGTGAGAAGGGCAAATCCTTGGGC
AGCAACTTGGATATGACAGAAGATGAAGCATGCTCAGCCAGTCAACTCGT
CCTTGTAGAGATTGAACCCTGGTCCAGAAGGTGACACCAGCAGTCCTTGT
AGGACAGACTTTCAGTTGTTCCTGTCCCTCCTTGATTTTGCTTGAGCATA
CTGTACAAAGTCAGATTTGGCTTTTCTCTCTTGCTCTCATTCTTACCAGA
CAAGGCAGGAATGGCTAGTGCTGGCCACTCCTTGGACTTTGGACAGGGAT
CTTGGGAAGAAAGCAAGGCAGGTTGGCATATCTACTGACCATCCTGAAGT
GTCTGGGCACAGGCCCTTGAAACTGCACTCACATGTTCATAAAGAAGCCA
CTCCCTTTTCAGAAGCAGAACTCACTTATGTCCAATGTCNAACAAGAGGT
ACAAATGTTACATGTGGCTGCGGGTGATAGAGGCCTAGCTAATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_f09.b1 MSMg01no420_f09.b1 CHROMAT_FILE:
MSMg01no420_f09.b1 PHD_FILE: MSMg01no420_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:09 2005
         (229 letters)



>mm_chr11_36109187_36109815
          Length = 629

 Score =  443 bits (229), Expect = e-129
 Identities = 229/229 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagtcacaaaacttacgtacatgatagaggaccacagtgcaaggcagcctgtacaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 atagtcacaaaacttacgtacatgatagaggaccacagtgcaaggcagcctgtacaataa 370

                                                                       
Query: 61  atcaccgccctccatcttcctcctgtatagaatcaagttccgacatgcttcctgcctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 atcaccgccctccatcttcctcctgtatagaatcaagttccgacatgcttcctgcctgcc 310

                                                                       
Query: 121 gtcttctatcacctgtctagcccttctctacagagagagccaaggtcgggaatcttccga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtcttctatcacctgtctagcccttctctacagagagagccaaggtcgggaatcttccga 250

                                                            
Query: 181 ctctgcagcttcctgggaagtgtcagaagtcagcttctcttgtctaaaa 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ctctgcagcttcctgggaagtgtcagaagtcagcttctcttgtctaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no420_f09.g1 MSMg01no420_f09.g1 CHROMAT_FILE:
MSMg01no420_f09.g1 PHD_FILE: MSMg01no420_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:09 2005
         (550 letters)



>mm_chr11_36079530_36080479
          Length = 950

 Score = 1064 bits (550), Expect = 0.0
 Identities = 550/550 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagctccctgtggaatgcagagagactgtgggcctggctactactcgaagagaccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagctccctgtggaatgcagagagactgtgggcctggctactactcgaagagaccaat 260

                                                                       
Query: 61  caaaagtactagcgcacagtatggctctgagggagagcatttgcctaccacagggtcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaagtactagcgcacagtatggctctgagggagagcatttgcctaccacagggtcaat 320

                                                                       
Query: 121 ccccagtgtcatgggaaacatttattaaaaaagtcttttgtgagttgtagatgtgatggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccagtgtcatgggaaacatttattaaaaaagtcttttgtgagttgtagatgtgatggc 380

                                                                       
Query: 181 tactggagtgataactgcctcagagacagtgagaagggcaaatccttgggcagcaacttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactggagtgataactgcctcagagacagtgagaagggcaaatccttgggcagcaacttg 440

                                                                       
Query: 241 gatatgacagaagatgaagcatgctcagccagtcaactcgtccttgtagagattgaaccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatatgacagaagatgaagcatgctcagccagtcaactcgtccttgtagagattgaaccc 500

                                                                       
Query: 301 tggtccagaaggtgacaccagcagtccttgtaggacagactttcagttgttcctgtccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtccagaaggtgacaccagcagtccttgtaggacagactttcagttgttcctgtccct 560

                                                                       
Query: 361 ccttgattttgcttgagcatactgtacaaagtcagatttggcttttctctcttgctctca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttgattttgcttgagcatactgtacaaagtcagatttggcttttctctcttgctctca 620

                                                                       
Query: 421 ttcttaccagacaaggcaggaatggctagtgctggccactccttggactttggacaggga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcttaccagacaaggcaggaatggctagtgctggccactccttggactttggacaggga 680

                                                                       
Query: 481 tcttgggaagaaagcaaggcaggttggcatatctactgaccatcctgaagtgtctgggca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcttgggaagaaagcaaggcaggttggcatatctactgaccatcctgaagtgtctgggca 740

                     
Query: 541 caggcccttg 550
           ||||||||||
Sbjct: 741 caggcccttg 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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