BAC Information

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BAC

Clone NameMSMg01-420K17
Chromosome11 (Build37)
Map Location 74,485,623 - 74,649,381
singlet/doubletdoublet
Overlap genePafah1b1, Mett10d, Mnt
Upstream gene1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik
Downstream geneRutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420K17.T7 (MSMg01no420_k17.b1)MSMg01-420K17.TJ (MSMg01no420_k17.g1)
ACCAG515481AG515482
length823737
length of high quality
(start - end)		204 (127 - 330)567 (67 - 633)
definitionCHROMAT_FILE: MSMg01no420_k17.b1 PHD_FILE: MSMg01no420_k17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:35 2005CHROMAT_FILE: MSMg01no420_k17.g1 PHD_FILE: MSMg01no420_k17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,649,179 - 74,649,381)(74,485,623 - 74,486,189)
sequence
TTTTTTTTTTTTNCNTCCCTACATCTGCTATGTGTCCCATTCTCCCCACC
ATAAATTGCGGCGCTAAAGGANCACTACTTTCAAAGATGGGCNGGAANCA
CAAGTACTAGCAAAAAGAGAGCGNGNCAGACACAGGGAGNCTGACACCCA
GCCAGATGCCCTATACTTGCAAGCTCACAAGGTATCCTCGCCCATCCTCA
GCCCCAGGTTACTGGGCAAACATCATGTCACTGCATGAGAAAAGGGCCCT
GGACTCCTGCTCCCAGGCTAAGTCCAAGGCCTCAAATTTTCCCAGAGAGC
TATGAACACAGTAGTCTCTTCTTCCAAACAGTTACAACCCATTTCTCAAG
CCTTGTCCATTGTCTGTTGTTTTTTGTACAACAGCATCTATAGCAGGCAC
AGCACAATTTACAAAGGTAAGAGGCAGGCATAAAGTTAGAGCACTTTAGC
TACTAGGAGTCCCGAGGCAGGGCCACTGGACCTAGGCAACTTTTATTTTT
AATTATTTCTTGAAGATTTATTATTATATGTAAGTACACTGTACCTGTCT
TCTGATACACCTTAAGAGGATGTCATATTTCCTTTATACATGGTTGTGAG
CTACCCTGTGGTCGCTGGGTATTTGATCTCTTGACGACACTGCCCTAGCC
TCTTAACTCTCTTTCTCTTCGCTCCCATGCCTCCCGGGCTTCTTTTTATT
ATTATGCACCCTTTTTGCCTCCTCTTTCTGAAACCTCCCCTTATATACCT
CGCCTACTCAATCTCAGGAAAGTTATGACTGGTTATTTGGGGATTATTTC
CTACTCTCATATTGATCTCTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGACTGTGAATTTAGGGCTTGTGCAGCAAGCACT
TCTATCTGCTTAGACATCTCACTAGCCAATTAGATCTTTTGACAACTCAA
CAGGAAACTCAGTTGAGGGCCACAGGACAACCTGAGGAATCCCTATATAT
TCTATGGCTGAGAAGTATCCTGAAGTGGCTCAGAGCAGCTTCAATGCAAG
AAGGTATTCAACTGTTGGGGCTATTAACTGATGCCGCTGACAGTTATCAG
GAAGCTGGAAGTGGTGGTATATGCTGAGGCAGGGCTATTGATGGAATTCA
AGGATAGCCTGAGCTAGATACTGACCCGGTTTCAAGACTCCCAAAATGAA
GGGCTATCTTACTGGCCTCTTCATACTGAGGAACTAATATAAAGTAGCCA
AGTATGGTGGATGCCTTTTAGTCCCAGCACTTGGGAAGCAGACAGGTGGA
TCTCTGTGAGTTCCAGGACAACCAGAGCTTACATAGTGAGACCCTGCATT
TAAAATAAATAAATTTCCAACTACTGTCAGTGAAATGGTTCAGTAGAAAA
AGGTACTTATTGTCAAATCTGACTTCACTTTCAATGGTAGAACGCATTCC
CAAATAATCTCTGGCCTTACACTGTAGCATAAACACATGCACATAGTAAT
TTTAAAATTTAAAAACAACTATTCTTTTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_k17.b1 MSMg01no420_k17.b1 CHROMAT_FILE:
MSMg01no420_k17.b1 PHD_FILE: MSMg01no420_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:35 2005
         (204 letters)



>mm_chr11_74648979_74649582
          Length = 604

 Score =  348 bits (180), Expect = e-100
 Identities = 197/203 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacacagggagnctgacacccagccagatgccctatacttgcaagctcacaaggtatc 60
           ||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 403 cagacacagcgagtctgacacccagccagatgccctacacttgtaagctcacaaggtatc 344

                                                                       
Query: 61  ctcgcccatcctcagccccaggttactgggcaaacatcatgtcactgcatgagaaaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctcgcccatcctcagccccaggttactgggcaaacatcatgtcactgcatgagaaaaggg 284

                                                                       
Query: 121 ccctggactcctgctcccaggctaagtccaaggcctcaaattttcccagagagctatgaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 283 ccctggactcctgctcccaggctaagtccaaggcctcaaattttcccagagagcaatgaa 224

                                  
Query: 181 cacagtagtctcttcttccaaac 203
           | |||||||||||||||||||||
Sbjct: 223 cgcagtagtctcttcttccaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no420_k17.g1 MSMg01no420_k17.g1 CHROMAT_FILE:
MSMg01no420_k17.g1 PHD_FILE: MSMg01no420_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:35 2005
         (567 letters)



>mm_chr11_74485423_74486389
          Length = 967

 Score = 1073 bits (555), Expect = 0.0
 Identities = 564/567 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agactgtgaatttagggcttgtgcagcaagcacttctatctgcttagacatctcactagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agactgtgaatttagggcttgtgcagcaagcacttctatctgcttagacatctcactagc 260

                                                                       
Query: 61  caattagatcttttgacaactcaacaggaaactcagttgagggccacaggacaacctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caattagatcttttgacaactcaacaggaaactcagttgagggccacaggacaacctgag 320

                                                                       
Query: 121 gaatccctatatattctatggctgagaagtatcctgaagtggctcagagcagcttcaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 gaatccctatatattctatggctgagaagtatcctgaagtggctcagagcagctttaatg 380

                                                                       
Query: 181 caagaaggtattcaactgttggggctattaactgatgccgctgacagttatcaggaagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagaaggtattcaactgttggggctattaactgatgccgctgacagttatcaggaagct 440

                                                                       
Query: 241 ggaagtggtggtatatgctgaggcagggctattgatggaattcaaggatagcctgagcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaagtggtggtatatgctgaggcagggctattgatggaattcaaggatagcctgagcta 500

                                                                       
Query: 301 gatactgacccggtttcaagactcccaaaatgaagggctatcttactggcctcttcatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatactgacccggtttcaagactcccaaaatgaagggctatcttactggcctcttcatac 560

                                                                       
Query: 361 tgaggaactaatataaagtagccaagtatggtggatgccttttagtcccagcacttggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaggaactaatataaagtagccaagtatggtggatgccttttagtcccagcacttggga 620

                                                                       
Query: 421 agcagacaggtggatctctgtgagttccaggacaaccagagcttacatagtgagaccctg 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 agcagacaggtggatctctgtgagttccaggccaaccagagcttacatagtgagaccctg 680

                                                                       
Query: 481 catttaaaataaataaatttccaactactgtcagtgaaatggttcagtagaaaaaggtac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catttaaaataaataaatttccaactactgtcagtgaaatggttcagtagaaaaaggtac 740

                                      
Query: 541 ttattgtcaaatctgacttcactttca 567
           |||||||||||||||||| ||||||||
Sbjct: 741 ttattgtcaaatctgactccactttca 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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