BAC Information

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BAC

Clone NameMSMg01-420P24
Chromosome11 (Build37)
Map Location 87,450,336 - 87,450,513
singlet/doubletsinglet
Overlap geneHsf5
Upstream geneTmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4
Downstream geneRnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420P24.T7 (MSMg01no420_p24.b1)MSMg01-420P24.TJ (MSMg01no420_p24.g1)
ACCAG515732AG515733
length718783
length of high quality
(start - end)
---181 (69 - 249)
definitionCHROMAT_FILE: MSMg01no420_p24.b1 PHD_FILE: MSMg01no420_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:00 2005CHROMAT_FILE: MSMg01no420_p24.g1 PHD_FILE: MSMg01no420_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCCTATAATTGTTGCGCTGATAGAGANTATTTCTCAAAGGAGCGGAGGA
ANCGTCTCTTACAAAAGGAGCATCGNGGAGGACCACACACCCCCCGACGG
AGGGACGATTGAGGAGGCCACCTCCTCCCGAAGGATGGGAGTAGAAGAGC
CTGCTGAGGTCGACGAGAATGTGATAAGACAGCCTCCTGCCGGCATCATC
AGTGGTGACGCTCCGCAGGAGATGGCATCGCCGACTGGTGTTTTTAACAA
CTACTTACTCCTACGAGAGGAGGACCCCCCCCGACGAGGCGTGTTGTGGG
AAGCATTTTTGTTTTAATAATAGGGTGCCTCCCACCTCCGATCAGAAGAT
TAACACAGCGGAGTGATGGAGGTGGGAGAAGACAGATGAGGCCCCCCGGA
CGCGCCGCCCCACTTCTGACGAAGGAGGCGGCATCGCGTGATGGTAGTTG
CTGGCGGCCAACCAGATGAGCCACCCTGCAGCATCCGGGAGGATGCCCCC
CAAAGCAAGCGTTGGGCGTCCATTAAGCGAGTAGTGGTGGGCTACCCATC
CAGGAGGGCGGCTTTTTTGGTTCCGACACACTCGCTGCCGCCCCCTCCGC
CGCTTGCTCCCCCTTCTTTCCCCGCTGGGGAGCAGATTTTCTTTCTTTGT
CTTCTAGCGTTGGGCATTTAGGACCCCCCGTGGGGTCTTTCTTACTGGCG
GTGGGGTTCCCCCTTCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACATTTTAGCCAGGAATAACTTGGACCTGTAT
ATCCTCCTCCTCCTCCCTCTCAGGTAATGGAATAATAGTCATATATCATC
ATACCCGATTCATTTTGTTTGCTGTATAGGGTATTGTTGTATGTAGTTCT
TTTGAATATATTTATATGTATATAATATGTAAGTATAAAGATTTTANTTT
TTTTTTCTCTNTNTGATTTTGNTGTNTGNTGTTGTTGTTTNTTTTGTTGG
GGTTTGGGGGGGGGGTTTTTTTTTTTGTGGTGGGTGTGGGGTTTTTGGGN
TTGTTTGTTTTTTTTTTTTTTTTGTGTGGTGTGTGTGTTTTTTTTAAGTT
TTTTGTTTTTTNNNNNNNTTTTTTTGGTTTTTTTNGTTGTGGTTGTTTTT
GTGTTTTTTTGTTTTTACTTTTTTTGTTGTGTTGTTGTTTTTTTTTTTTT
TTTTTTGGTTTTTTTTGTTTTTTTTTATTNGGTTTTGTGTGTTTGTTGTT
TTTTTATTTTGTNTTTTTGTTTGTTGATTTATATGTTTTTTTGTTGTTTA
TTTTTTTATGTTTTTGTTTTTTGTTGTGTTTATTTTTTTTTTTTTGCATT
ATTTTGGGATACTTTTTTTCTTTTTCTCTTTTCTTGTTCGTTTCACTTCT
TCATTTCCTCGCTGTTTTTTATTTTCTCTTCTTATTTTACCTCCCCTTTT
TCTTTGCTTTTTCTTTCCCGTCTTTTCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_p24.g1 MSMg01no420_p24.g1 CHROMAT_FILE:
MSMg01no420_p24.g1 PHD_FILE: MSMg01no420_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:00 2005
         (181 letters)



>mm_chr11_87450136_87450716
          Length = 581

 Score =  337 bits (174), Expect = 3e-97
 Identities = 177/178 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattttagccaggaataacttggacctgtatatcctcctcctcctccctctcaggtaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattttagccaggaataacttggacctgtatatcctcctcctcctccctctcaggtaat 260

                                                                       
Query: 61  ggaataatagtcatatatcatcatacccgattcattttgtttgctgtatagggtattgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaataatagtcatatatcatcatacccgattcattttgtttgctgtatagggtattgtt 320

                                                                     
Query: 121 gtatgtagttcttttgaatatatttatatgtatataatatgtaagtataaagatttta 178
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatgtagttcttttgaaaatatttatatgtatataatatgtaagtataaagatttta 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)