BAC Information

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BAC

Clone NameMSMg01-421B17
Chromosome11 (Build37)
Map Location 93,610,638 - 93,610,888
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382545, LOC100039286, Car10, LOC629636
Downstream geneUtp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421B17.T7 (MSMg01no421_b17.b1)MSMg01-421B17.TJ (MSMg01no421_b17.g1)
ACCAG515814AG515815
length778848
length of high quality
(start - end)
441 (74 - 514)255 (76 - 330)
definitionCHROMAT_FILE: MSMg01no421_b17.b1 PHD_FILE: MSMg01no421_b17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:09 2005CHROMAT_FILE: MSMg01no421_b17.g1 PHD_FILE: MSMg01no421_b17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCCGCG
GAATTCATTAGAAATTTCCTGCCAAGCCAAGCCTGTTGGCCCAGGCCTGT
AATTCTAACACTCAGGAGACAGAGGCAGGGGGATGAATTCCAGGCCAGCC
TAGACTACATAGTGAAACCTTGTCAAAACAAAACAAATCAAACAGCTGGG
TGTAGTGGAGCATGCCTTTTAATCCCAGCACTGGGGAGGCAGAGGCACTC
TCTCAAAAAACCAAAACAGGAAAACAACAATCCCCCACCGGCTGGGGATG
TAGCTTAGTTGGAAGAGAGAGTCTGTTCTAACATACATGAAACCTTGGGT
TCTATCCCGAGCACTGCAGAATAGCATGGTAGTACTGTGATCCAGCACTC
AGGAGGTAGGATCAGAAGTTCAGAGTTGTCCTCAGCTTTATAGTTTGAGG
CCAGCCTGGGCTATACAAGAACTTCTCTTAAAAAAAAAAAAAAAAAAAAA
AAAGCTGGATGGTGGTGGCTCATGTCTTTAATCCTAGCACTCAGGAGGCA
GGGGTAGGTAGTTTGAGATCAGCCTGGTCTGCCGAGTGAGTTCCAAGACA
ACCCGGGAAAGACAGAAACTCCTGTCTTGTAAAAACAAAACACCTGCTTA
ACTCTCCCTCTAACCTTTATATCCTGAGAAGTTGTTAGTTATCCTCTCAA
TCCAAAACCCCCTGTTTTCTTGAATACCTGTGTACCCCAACTGGTTGGCC
CAAGGAATGTGCCTTTCTTTTTCGGTGT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTGAGGTTTGTTTCCATGGTGACT
GTAAATCCATCAAACCAAGAACCAAAATTAATCATCCCAGTGGGCATGAC
ACGGATGACTCCATTCTGTATACTGATCACATACACACATGGAGGGAGGG
AGAAAAGAAAGGGAGGAGGGAGGGAGGGACAGACAGATGGACAGAGAGTA
TATAGTTGTAGATGTGAGGTATATACCCTCTGGGAAAGTGTAGGTACTGG
ATTATCAATATGTATTTGCCCTCTTTTTTTTTGAAGGCACTTGTTTCAGG
AGAGATCGCTCATTGTTTAAGAGTATTAGTTTGCTCTTCCTGAGAGATGT
GATCTTCAGTCCCATTTTTTCTCCCGCCCACTTCATTATCTTTTGTTCAC
TCTTATTTTCACACCTGTAACTCTTCTTATGTCCTCCTAGGTCAACTATT
AGTTATTGTCGTTCACTGATCCTACCTTTATGTCATTTCCCTTTATATCC
TGTCGTTCCCAACTTTATTACTTAACCTTTACTTAATATTCTCTTGTTTT
TACATACTTTTTTTTTGGCTCTTCTTTCCGTAATTTGTATTTTTTATGTC
ATCCTCCTCCCCAATTTTTTTACGTTTTTTCTTTTCTCTTTTTTTTTCTT
TTTTTACTTTACATTACTTCGTATATATATCTTACTCTCTTCTTAGTCTC
TCTTCCCTACTCTGACTTATTCTTATGTTATTGTTGTCTTAACTCTATCT
ATCACCTCTCTCTCGATTATATATTCTTTCTCTCTCTTTCTTTTTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_b17.g1 MSMg01no421_b17.g1 CHROMAT_FILE:
MSMg01no421_b17.g1 PHD_FILE: MSMg01no421_b17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:09 2005
         (255 letters)



>mm_chr11_93610438_93611092
          Length = 655

 Score =  455 bits (235), Expect = e-132
 Identities = 247/251 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgaggtttgtttccatggtgactgtaaatccatcaaaccaagaaccaaaattaatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgaggtttgtttccatggtgactgtaaatccatcaaaccaagaaccaaaattaatcat 260

                                                                       
Query: 61  cccagtgggcatgacacggatgactccattctgtatactgatcacatacacacatggagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagtgggcatgacacggatgactccattctgtatactgatcacatacacacatggagg 320

                                                                       
Query: 121 gagggagaaaagaaagggaggagggagggagggacagacagatggacagagagtatatag 180
           ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 321 gagggagaaaagaaagggaggagggagggagggacggacagacggacagagagtatatag 380

                                                                       
Query: 181 ttgtagatgtgaggtatataccctctgggaaagtgtaggtactggattatcaatatgtat 240
           |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 381 ttgtagatgtgaggtatataccctctggcaaagtgcaggtactggattatcaatatgtat 440

                      
Query: 241 ttgccctcttt 251
           |||||||||||
Sbjct: 441 ttgccctcttt 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)