BAC Information

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BAC

Clone NameMSMg01-421M08
Chromosome11 (Build37)
Map Location 70,906,801 - 70,906,920
singlet/doubletsinglet
Overlap geneNlrp1a
Upstream geneAsgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536
Downstream geneNlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421M08.T7 (MSMg01no421_m08.b1)MSMg01-421M08.TJ (MSMg01no421_m08.g1)
ACCAG516319AG516320
length776788
length of high quality
(start - end)
177 (126 - 302)120 (131 - 250)
definitionCHROMAT_FILE: MSMg01no421_m08.b1 PHD_FILE: MSMg01no421_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:04 2005CHROMAT_FILE: MSMg01no421_m08.g1 PHD_FILE: MSMg01no421_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGTGATCCGCGGNAATC
AACCCTCCTTACAAAAAAAAGCAANTTTTTTTTTTTTTTTTTTTTTGGGT
TTTCAAGACAAGGTTTCTCCATGTAGCCCCGGCTGCCCTGGAACTCACTC
TGTAGACCAGGTTGGGCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCC
AAGTGCTGGGATTAAAGGCATGTGCCACCACTGCCCAGCGTCAAATCTTT
TTTTCATATGCAAAGTGGTCTACTCTGTCTGAACTAATGATACTCACCAA
GAACTGCGGGGTATGTTACTCTTCTGTCCCCGGTTTCTGGCCTGGAAACG
GAAACCAAATCTTTTTTCCTCCATTTAATGGACTGCACTACTCTGGTTAC
CACTGAACACCTTGCTGAGAGCTTCACCTCTTCTGCCCTACTCTTGCTTC
CTCCAAACAGGACAGCTGAGGATTCATCCTCCACCTTGTGACCAGAGGAC
AAAATTCATCTTAGCATCTTCAAGGAACTTATGAAAGACAGGCGTTAAAG
GAAGAAGATTCTAAATTTGCAAGGGAAGGAGGTAAATTCCTAAGTGCCCT
TCTCGAATGGCAATGGTGGGAAACACGTATTTGGATTAATGGTCCTATAA
AAATCTTTGTTATTTTTATCTTAACTCTCTGCAAAAACAACTCATGGTAN
AATCCTACTTCGTTAACTGGAAATAACGTCCCATTTTATACTCACAAAAA
TTGGTCTCCCTTATGTTCTCTTGTTN
ATTACTTTGTGTAGGCCTGGNGGNCGNCTGGNCCGTGCACTATGGGTNGA
ACTANAGAAGGATTTGCCTAAAAACGTGGGAACAACCAATCAAGTCCCTT
GCTAGATGGCTTTGACATTCTTTCTCCGCTTAAATAAACAACAGAACAAA
GTAAAACAAAAATCCTACTTTTTTGTCCCTGTTTGATTTTGTACACTTAC
ATATGAGAAACTTGTGTTCTGGATTTGATGGCAGAATTAAGGTGAAGGAA
CACAGATCTCATGGTAATAGTGAAAGAATTTCATCTACAAGTGAAGGAGA
TTAATAAGCTGCAGCTCATGAATATTTTTTTTTGNACCCACATTTACTGT
GCTCTGACAATTTTGTGAAGTCATCCCAAAGACTCAGTCTGCTGTAATCG
GAATACCTGCTTGATTAGGGGAGCTTGGTTTTGGGAGTTGTATTATGACT
CTATTGTTACTGCACTCAAGACATTTTAGCATATTCACTTTTCTATGTCA
TCTTGAAGATATAGATGTGCTACTATAACATATAAATAAACATAAACAAA
TACCTTATAATTATTCCATCACTATGCTGGTAAAAAATCTTTATTCATTC
GCATTGATAGACTTTTTACCACCTATATCCTAACATCTGCTTTATGATTT
AACTCCTTGTAACGCCTTTCTTTTTTTTTTTTTACACTCTTCCAACACCT
CCATTGTCCTTGACATAACTACACATTGTTGATCCTTTTTCTTTTTATCC
ATATACTACCTTTACTAACTGCTCACGCGCCCTCTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_m08.g1 MSMg01no421_m08.g1 CHROMAT_FILE:
MSMg01no421_m08.g1 PHD_FILE: MSMg01no421_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:04 2005
         (120 letters)



>mm_chr11_70906601_70907120
          Length = 520

 Score =  232 bits (120), Expect = 5e-66
 Identities = 120/120 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaataaacaacagaacaaagtaaaacaaaaatcctacttttttgtccctgtttgatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaataaacaacagaacaaagtaaaacaaaaatcctacttttttgtccctgtttgatttt 260

                                                                       
Query: 61  gtacacttacatatgagaaacttgtgttctggatttgatggcagaattaaggtgaaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtacacttacatatgagaaacttgtgttctggatttgatggcagaattaaggtgaaggaa 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 520
Length adjustment: 8
Effective length of query: 112
Effective length of database: 512
Effective search space:    57344
Effective search space used:    57344
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)