BAC Information

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BAC

Clone NameMSMg01-422A19
Chromosome11 (Build37)
Map Location 79,764,626 - 79,910,865
singlet/doubletdoublet
Overlap geneUtp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5
Upstream geneNos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584
Downstream gene1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3, Accn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422A19.T7 (MSMg01no422_a19.b1)MSMg01-422A19.TJ (MSMg01no422_a19.g1)
ACCAG516533AG516534
length723735
length of high quality
(start - end)
327 (321 - 647)622 (65 - 686)
definitionCHROMAT_FILE: MSMg01no422_a19.b1 PHD_FILE: MSMg01no422_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:25 2005CHROMAT_FILE: MSMg01no422_a19.g1 PHD_FILE: MSMg01no422_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,764,626 - 79,764,949)(79,910,244 - 79,910,865)
sequence
TCGTGTCGCTAAACGACTACTATATTTCGTACCCGGCGGAATTCTGCACC
TATTACTAAAACCTGAGGGGAGAGGGCGATCTGCTGTCGGTTAAACTGTA
AAGACACTCTTCACTCTAAACGAGCCATTTTCTTTATGTATTAGAGTTAG
TCTTTTGGGGATTGCTGTCTTTTGCCTTGAGACAGGGCTTCACTATCTAG
TCATGGCTGGCTTCTACTCACTCCTCTCCCGAACCCTAATGGTTTTTATC
AAACCTACATCCTTATGCTGCAAGGCAAGCACTTTAAGCTACAAGCCCTA
CCTCAGATGTCCNCTAANCTGGAACCTCCTGTTCCCCCGGGTGTTAGGGG
CCACCATACCAAGCTTGGTTTTTGTTTTCCTGGTGCTGGATCCAACCCAT
GACCTAATGCATGATGGAACTAGCACTAAGCTATGCTCACAGTTAGAACG
GGCAGCCTCCTTCTGGTGACTTTTGTTTTTTGTTTTTTTAAATAGAACAA
AGAGAGGAGATAGTCCTATATCCCCACCACATGTACAAAGACATTAACAT
TTTGAAATATTTCTAAATATTCTTAAGTTTCATAAACTTAAGGGCATAAG
GCAAAGATTATATCATCTACTCCTTTCCAACTCCCCCAAATTAGGCAAAT
ACTCTTTATAAACTTACTGAAATGCCCGATGATAGCTCTAAAGGAAGCTT
TTTCTGAAGACACAGTATACTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAAGGGTAGCCTTATCTCTATAGCAAGTTCCAGGCCA
TCCAAGAGAGACCCTATCTCAAAAAAATAAAGAAAAAGGGGCGGAGGAAG
GAAGGGAGCAAGCAAGGAGAGGCCGAGGGAGGGAAAGGGAGAAAAGAAGA
GAAGCAAAGAGAAGAAAATAAGCCTACCTGTCTAGTATGAGCCCCATGGA
GCATAGCAAAAGCAGAAACAAAAAGAAGAAGGTAGCACAACTTGAAGAAA
GTTAGAACTTGTGCCATTTTCTCTGTAACATTGGGCAAGGCCAGTATGCA
AGCTCCATCATCTACTGGTCAGTTTACCTAAGGAATAACACTCAGCTGGC
TGTGCTGGTGCTTGCCTTAATTCCAGCACCCTGACCGCAGAGGCATGGGG
ATCCCTTTGAGTTGAAAGCCAGATTGGTCTACATAAAGTTCCATGACAGC
CAAAGGTATACAGAGAGGCCCTGTTTCAAAACAATAATAAAAAACTACTC
TTATAATTTATTTTTAATCTCATATTTGATGAACTCATATTTGAAGACTA
TTTCTCTCCAAGGATTATCAACTATGACAAATAAGAGTTTAGAACTCATC
TTAAATCTATCTGAAAAATCTTCTGAAATGGACTTTAAATTAGCTATATT
GTGGGGATACACACCAGGAATCCCAGCACTTGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_a19.b1 MSMg01no422_a19.b1 CHROMAT_FILE:
MSMg01no422_a19.b1 PHD_FILE: MSMg01no422_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:25 2005
         (327 letters)



>mm_chr11_79764426_79765152
          Length = 727

 Score =  619 bits (320), Expect = 0.0
 Identities = 323/324 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaacctcctgttcccccgggtgttaggggccaccataccaagcttggtttttgttttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaacctcctgttcccccgggtgttaggggccaccataccaagcttggtttttgttttcc 260

                                                                       
Query: 61  tggtgctggatccaacccatgacctaatgcatgatggaactagcactaagctatgctcac 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tggtgctggatccaacccatgacctaatgcatgatggaactaacactaagctatgctcac 320

                                                                       
Query: 121 agttagaacgggcagcctccttctggtgacttttgttttttgtttttttaaatagaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttagaacgggcagcctccttctggtgacttttgttttttgtttttttaaatagaacaa 380

                                                                       
Query: 181 agagaggagatagtcctatatccccaccacatgtacaaagacattaacattttgaaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagaggagatagtcctatatccccaccacatgtacaaagacattaacattttgaaatat 440

                                                                       
Query: 241 ttctaaatattcttaagtttcataaacttaagggcataaggcaaagattatatcatctac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctaaatattcttaagtttcataaacttaagggcataaggcaaagattatatcatctac 500

                                   
Query: 301 tcctttccaactcccccaaattag 324
           ||||||||||||||||||||||||
Sbjct: 501 tcctttccaactcccccaaattag 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no422_a19.g1 MSMg01no422_a19.g1 CHROMAT_FILE:
MSMg01no422_a19.g1 PHD_FILE: MSMg01no422_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:25 2005
         (622 letters)



>mm_chr11_79910179_79911200
          Length = 1022

 Score = 1164 bits (602), Expect = 0.0
 Identities = 617/622 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagggtagccttatctctatagcaagttccaggccatccaagagagaccctatctcaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aagggtagccttatctctatagcaagttccaggccatccaagagagaccctatctcaaaa 628

                                                                       
Query: 61  aaataaagaaaaaggggcggaggaaggaagggagcaagcaaggagaggccgagggaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aaataaagaaaaaggggcggaggaaggaagggagcaagcaaggagaggccgagggaggga 568

                                                                       
Query: 121 aagggagaaaagaagagaagcaaagagaagaaaataagcctacctgtctagtatgagccc 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 567 aagggagaaaagaagagaagcaaagagaagaaaataaacctacctgtctagtatgagccc 508

                                                                       
Query: 181 catggagcatagcaaaagcagaaacaaaaagaagaaggtagcacaacttgaagaaagtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 catggagcatagcaaaagcagaaacaaaaagaagaaggtagcacaacttgaagaaagtta 448

                                                                       
Query: 241 gaacttgtgccattttctctgtaacattgggcaaggccagtatgcaagctccatcatcta 300
           ||||||||||||   || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gaacttgtgccaggatcactgtaacattgggcaaggccagtatgcaagctccatcatcta 388

                                                                       
Query: 301 ctggtcagtttacctaaggaataacactcagctggctgtgctggtgcttgccttaattcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctggtcagtttacctaaggaataacactcagctggctgtgctggtgcttgccttaattcc 328

                                                                       
Query: 361 agcaccctgaccgcagaggcatggggatccctttgagttgaaagccagattggtctacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agcaccctgaccgcagaggcatggggatccctttgagttgaaagccagattggtctacat 268

                                                                       
Query: 421 aaagttccatgacagccaaaggtatacagagaggccctgtttcaaaacaataataaaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaagttccatgacagccaaaggtatacagagaggccctgtttcaaaacaataataaaaaa 208

                                                                       
Query: 481 ctactcttataatttatttttaatctcatatttgatgaactcatatttgaagactatttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ctactcttataatttatttttaatctcatatttgatgaactcatatttgaagactatttc 148

                                                                       
Query: 541 tctccaaggattatcaactatgacaaataagagtttagaactcatcttaaatctatctga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tctccaaggattatcaactatgacaaataagagtttagaactcatcttaaatctatctga 88

                                 
Query: 601 aaaatcttctgaaatggacttt 622
           ||||||||||||||||||||||
Sbjct: 87  aaaatcttctgaaatggacttt 66


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)