Query= MSMg01no422_b22.b1 MSMg01no422_b22.b1 CHROMAT_FILE:
MSMg01no422_b22.b1 PHD_FILE: MSMg01no422_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:30 2005
(466 letters)
>mm_chr11_60733102_60733967
Length = 866
Score = 870 bits (450), Expect = 0.0
Identities = 462/466 (99%)
Strand = Plus / Plus
Query: 1 aggacctcagtttcttcaaaagcagcattgttctcggattgtccttttgagtctgccatg 60
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 201 aggacctcagtttcttcaaaagcagcattgttctcagattgcccttttgagtctgccatg 260
Query: 61 tgcagcctgcccttgtgactgtcctttactcgtgtgatttctactagccctcagagcata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcagcctgcccttgtgactgtcctttactcgtgtgatttctactagccctcagagcata 320
Query: 121 aactgtccgatgctctgaataaagctgactattgcatgagacttcagcctgtctcattaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactgtccgatgctctgaataaagctgactattgcatgagacttcagcctgtctcattaa 380
Query: 181 ttggccccattctaccaggtcccactgtctctagagagataaaagatggcctggtactgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggccccattctaccaggtcccactgtctctagagagataaaagatggcctggtactgg 440
Query: 241 agttaggatgggtgcagggtgccatgtggtgctaggactcaacctggatcctctgtaagg 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttaggatgggtgcaggctgccatgtggtgctaggactcaacctggatcctctgtaagg 500
Query: 301 agagcaagtgctcttcactgctgagccatctctccaaccccgtcaaagccttgtcatctc 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 agagcaagtgctcttcactgctgagccatctctgcaaccccgtcaaagccttgtcatctc 560
Query: 361 ttatctgtgaggcattggcacagtgttcccttgcagacagcatgcccacaaagtgtgact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatctgtgaggcattggcacagtgttcccttgcagacagcatgcccacaaagtgtgact 620
Query: 421 gaggcagtgcctcgcagatgacttgaggctttgtcaaactgacagt 466
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaggcagtgcctcgcagatgacttgaggctttgtcaaactgacagt 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_b22.g1 MSMg01no422_b22.g1 CHROMAT_FILE:
MSMg01no422_b22.g1 PHD_FILE: MSMg01no422_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:30 2005
(466 letters)
>mm_chr11_60896519_60897382
Length = 864
Score = 799 bits (413), Expect = 0.0
Identities = 453/467 (97%), Gaps = 4/467 (0%)
Strand = Plus / Minus
Query: 1 tcacaagtttccccttaaaaacaaaattagcaaaaattatacaagtagagtgtgagaagc 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 664 tcacaagtttccccttaaaaacaaaattagcaaaaattacacaagtagagtgtgagaagc 605
Query: 61 tgatgtgggtgcttagccaatgacccaaaagttctcagaccacggaagacatcatggaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tgatgtgggtgcttagccaatgacccaaaagttctcagaccacggaagacatcatggaag 545
Query: 121 gtcattaaaattgaaacatggtgcccacaatttcagca-tcacagtagagatccgttctg 179
||||| ||||||| ||||||||||||||||||| | | |||||||||||||| ||||||
Sbjct: 544 gtcatcaaaattgtaacatggtgcccacaattt--g-attcacagtagagatcagttctg 488
Query: 180 atgacacttggggaagagtgtccccaccatgccgttttctgaacagagggctttgtttga 239
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 487 atgacacttggggaagagtgtccccaccatgccgttttctgaacagagggatttgtttga 428
Query: 240 gagccctcacagagaatgctctgtgaaggctgagaacaccatgcaccatcatccaaacat 299
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 427 gagccctcacagagaatgctctgtgaaggctgagaacaccgtgcaccaccatccaaacat 368
Query: 300 aagtcaacacaacagctttggacttccgatgcattttatttgatgtgtgatcctagcagg 359
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aagtcaacactacagttttggacttccgatgcattttatttgatgtgtgatcctagcagg 308
Query: 360 ctccaggatttccctgctgaggacgggaagcttccaaattggaaaactcggacatataaa 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctccaggatttccctgatgaggacgggaagcttccaaattggaaaactcggacatataaa 248
Query: 420 catccagagaaataaacacacagatgcacaagtggaaaagcaaagga 466
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 catccagagaaataaacacacagatgcacaagtggaaaagcaaagga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 864
Length adjustment: 10
Effective length of query: 456
Effective length of database: 854
Effective search space: 389424
Effective search space used: 389424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
