BAC Information

Click to search

BAC

Clone NameMSMg01-422C22
Chromosome11 (Build37)
Map Location 86,455,092 - 86,455,584
singlet/doubletsinglet
Overlap geneTmem49
Upstream geneBcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687
Downstream genePtrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422C22.T7 (MSMg01no422_c22.b1)MSMg01-422C22.TJ (MSMg01no422_c22.g1)
ACCAG516633AG516634
length746746
length of high quality
(start - end)		499 (38 - 536)486 (69 - 554)
definitionCHROMAT_FILE: MSMg01no422_c22.b1 PHD_FILE: MSMg01no422_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:34 2005CHROMAT_FILE: MSMg01no422_c22.g1 PHD_FILE: MSMg01no422_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCA
TTCTGTAGTCCAGGCTGGCCTTGAACTCAGAAATCCTAAGTGCAGGGATT
AAAGGCGTGCACCACTACTGCCCGGCTTGGCATTAGTATTAATCTAGCCA
CACAAATAACTTTTAAGAGAACAAAAATAAGAAACTGTATAGATAGCCTC
TTTTATTCTCTGTCATTCTAATAATAGTTTTTCATGATAATCTCCTCGGA
TCTATAAAACATACAACTAACATAATAAATCTGTCTCCAGTGTTTATAAA
AGAGCAACAGGAAACATGACAAGTCTTCCTGCCTTTCATAAACAACAACT
CAACATATGGCATTTCTTTTATAATTCCTTCAAAGCAAAATGTAATTGCT
GGGCTGAGGAGTAGTTTAGTGGAAGAGTACTTGCTTTTAGCAAGCGCCAG
GCCCAGCGTTTGATCTCCAGACCATCAGTGAGGGAGAAAAAGCACTAATA
TATAACTTTAACAACTCTGTCTCTTCTGCAGCTGGAGAGAAGGTGTGGTG
GTTAAGAGCACATACTTCTCTTCCAGAAGATCTGGGCTCCGNTCCCAGAA
CTAGATGGTGGCTCCTAACTTCAGTTTGGGGGTCTGAGACTGGCTTTTGC
ACTCCCAGGGAACAGGTACATAAATGGGGAGGAATCTATAGGGGGGAAAA
ATATTCCTTCCCTTAACCCCCGGCTATTCTTTCTAAAAAAAAAACG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGTCTCAAAAACAAAACAAAATAACAAAAAC
AACCAAACAACCCTGAAACGTAACTGTAACAAAGTGGCCACGTCTGGAGA
GATGACTTAGTGGGTAAGAGTTCTTGCTGCTCTTCCAGAGAACCGAGGTT
TAATTCCCAAATGGCAGCTCACAACTATACCTAACTCCAGTTTCAGGGGG
TCTGACTCCCCGTTCTGGCCTTCAGGTGCACTACACACACATGGTGCATA
GATACTGAGACACATACAATAATTGTAAATAAAATCTTTAAACAAATAAG
GTGATGGAATTCAAGCTGTTGGTAGAGTGCTTGCCTAGTTAACATCAAGC
TGCAGGCCCTATCCCAAGTATTCCTTGAAAAATGGTGGGTGGTGTAGCTC
TGTCACCCCAGTTCTCAGGAGGGACAAGCAGGTTCAGAAAGTCAAGGCCA
TTCTGAGCCACACTGTGAGTTCCAGGCCAGTATGAGCTACGTGAGATTCT
GTGTAATAGAATTCTGTGCNAATAAACCACAGCNACAACAAAATAACCAA
GCTTGATAGACTGGAAAAAACTGACATATCCACCCTTGGGTTTTAATGGG
ACGGGTGGCCTCCCTACCCCCCGGGAACCCTCCATTAAAGAAAAAAGAAA
AAAAAAGGGCCCGATACCCCGGAGCTTGGGCCCCCAACTTGTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_c22.b1 MSMg01no422_c22.b1 CHROMAT_FILE:
MSMg01no422_c22.b1 PHD_FILE: MSMg01no422_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:34 2005
         (499 letters)



>mm_chr11_86454887_86455784
          Length = 898

 Score =  909 bits (470), Expect = 0.0
 Identities = 488/494 (98%), Gaps = 1/494 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcattctgtagtccaggctggccttgaactcagaaatcctaagtgcagggattaa 65
           |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 206 ggaattcattctgtagaccaggctggccttgaactcagaaatcccaagtgcagggattaa 265

                                                                       
Query: 66  aggcgtgcaccactactgcccggcttggcattagtattaatctagccacacaaataactt 125
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 266 aggcgtgcaccactactgcccggcttggcatta-tattaatctagccacacaaataactt 324

                                                                       
Query: 126 ttaagagaacaaaaataagaaactgtatagatagcctcttttattctctgtcattctaat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaagagaacaaaaataagaaactgtatagatagcctcttttattctctgtcattctaat 384

                                                                       
Query: 186 aatagtttttcatgataatctcctcggatctataaaacatacaactaacataataaatct 245
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 aatagtttttcatgataatctcctcggatctataaaacatacaactaacataatgaatct 444

                                                                       
Query: 246 gtctccagtgtttataaaagagcaacaggaaacatgacaagtcttcctgcctttcataaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 445 gtctccagtgtttataaaagagcaacaggaaacatgacaagtcttcctgcctttcataat 504

                                                                       
Query: 306 caacaactcaacatatggcatttcttttataattccttcaaagcaaaatgtaattgctgg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caacaactcaacatatggcatttcttttataattccttcaaagcaaaatgtaattgctgg 564

                                                                       
Query: 366 gctgaggagtagtttagtggaagagtacttgcttttagcaagcgccaggcccagcgtttg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctgaggagtagtttagtggaagagtacttgcttttagcaagcgccaggcccagcgtttg 624

                                                                       
Query: 426 atctccagaccatcagtgagggagaaaaagcactaatatataactttaacaactctgtct 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atctccagaccatcagtgagggagaaaaagcactaatatataactttaacaactctgtct 684

                         
Query: 486 cttctgcagctgga 499
           |||| |||||||||
Sbjct: 685 cttccgcagctgga 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 898
Length adjustment: 10
Effective length of query: 489
Effective length of database: 888
Effective search space:   434232
Effective search space used:   434232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |