BAC Information

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BAC

Clone NameMSMg01-422G10
Chromosome11 (Build37)
Map Location 31,138,341 - 31,138,659
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2
Downstream geneStc2, 2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422G10.T7 (MSMg01no422_g10.b1)MSMg01-422G10.TJ (MSMg01no422_g10.g1)
ACCAG516799AG516800
length730721
length of high quality
(start - end)
297 (320 - 616)319 (318 - 636)
definitionCHROMAT_FILE: MSMg01no422_g10.b1 PHD_FILE: MSMg01no422_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:50 2005CHROMAT_FILE: MSMg01no422_g10.g1 PHD_FILE: MSMg01no422_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAAC
TTTTTCGCTGAGGAACGAGAGTACCAGTGAGTACAACTTTACGAGGTAAG
TCTGATCTTGAACTTTCTAAGGAAATTCAAGACAGTCTATCAGAAGTAAA
GTGAAAAATAGCTTTATAAGATATGTTTGGCCTTAAACTTTCTCTAGTGT
TAGAAGCCCTTTTGTTCCTTTTCACATGTTATCAAGTGGTTAAGGCAGGG
CGGATTCTAGATGAAATTCAGGACAATCTATCAGAAGTAAAGCGGGGAGA
GAGAGTAAGATCATAGTATAAATATGGTACACAAAATAAGTATACAGGCC
TTTCCAAGGGTCTTGAACCCGAGGAAAAGTTTAGGTCAGGTAAGAATACC
TGGGGAGAGATTAAAAGGAAGGAAAAGAAAAAAGAAAAGAAAAAAGATCG
ATTAGCGGAGGTCTCTAGGAGATACTCGTCACTAGATGAGCTCAGGAAGC
CAGCTCTTAGTAGCTCTGAAGCAGATGAAGAATTCTCCTCTGAGGAAACA
GACTGGGAGGAAAAAGCAGCCCATTACCAGCCAGCTAATTGGTCAAGAAA
AAAGCCAAAAACGGCTGGCGAAAGCCAGCGTACTGTTCAACCTCCGGGCA
GTCGGTTTCTAGGTCCGCCCTATGCGGAGCCCCCGCCCTGCGTAGTGCGT
CAGCAATGCGCATAGAGGCAGTGCGCATAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGTGCTGAAGTCTGCTATCCTTGTTCACTACTATTT
TTCTGGTTTAGAACTTTGCTATAAAAAGTTATCTTTCCAAAACTGAAGTT
TTCAGTTTTGATAGTTCAAAATAATATATTTTTCAGAATACTGAGCATCT
TAAAAATATTAAACTTCAAATATTTAATTCTTTAATATCAAACTATAATA
ATAATGCAAATATTACATGTCAGTTGTTTGTATTTATAGTGCAAATTTCA
GATTTTACTCTTTTCTTCTACCAGATGTATGTGATGTGATCTGATGCTCC
CTTGTTGGGCTGAGATGTGCAGGTAGCTACTACTCCCAAGAACCTATAAG
AGCCCAATCAACCTATGCATTTGTTATATGTGTCATGCTACTCAGGTCTG
ATGTGTATCAAGTGCATTCTGAATGAACAGAATGTCCAGTTTATGATGGT
TTGTTAGTTATAAATCTATCATAGTCAAGAACCATCTGTTCATACAGGTA
TGCTGTTTTTACTGTGTAATAAATCTTAACTGTTTAGTAGTTTAATTCCA
TAATAAGACATATAGCCTGCTCATTCTGTACTGACTTCCATCTCTGTCCT
GTTGGAAACTGCCTTATTTTTCCAGATCCTATTATCTGAATTTGGGTATT
CTTCTCTCCTATCCCTTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_g10.g1 MSMg01no422_g10.g1 CHROMAT_FILE:
MSMg01no422_g10.g1 PHD_FILE: MSMg01no422_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:50 2005
         (319 letters)



>mm_chr11_31138141_31138859
          Length = 719

 Score =  617 bits (319), Expect = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaccagatgtatgtgatgtgatctgatgctcccttgttgggctgagatgtgcaggtagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaccagatgtatgtgatgtgatctgatgctcccttgttgggctgagatgtgcaggtagc 260

                                                                       
Query: 61  tactactcccaagaacctataagagcccaatcaacctatgcatttgttatatgtgtcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactactcccaagaacctataagagcccaatcaacctatgcatttgttatatgtgtcatg 320

                                                                       
Query: 121 ctactcaggtctgatgtgtatcaagtgcattctgaatgaacagaatgtccagtttatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctactcaggtctgatgtgtatcaagtgcattctgaatgaacagaatgtccagtttatgat 380

                                                                       
Query: 181 ggtttgttagttataaatctatcatagtcaagaaccatctgttcatacaggtatgctgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtttgttagttataaatctatcatagtcaagaaccatctgttcatacaggtatgctgtt 440

                                                                       
Query: 241 tttactgtgtaataaatcttaactgtttagtagtttaattccataataagacatatagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttactgtgtaataaatcttaactgtttagtagtttaattccataataagacatatagcc 500

                              
Query: 301 tgctcattctgtactgact 319
           |||||||||||||||||||
Sbjct: 501 tgctcattctgtactgact 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)