BAC Information

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BAC

Clone NameMSMg01-422I03
Chromosome11 (Build37)
Map Location 23,811,064 - 23,958,286
singlet/doubletdoublet
Overlap geneA830031A19Rik
Upstream geneCommd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg
Downstream geneLOC100042256, Bcl11a, LOC100042282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422I03.T7 (MSMg01no422_i03.b1)MSMg01-422I03.TJ (MSMg01no422_i03.g1)
ACCAG516880AG516881
length733728
length of high quality
(start - end)		233 (65 - 297)273 (325 - 597)
definitionCHROMAT_FILE: MSMg01no422_i03.b1 PHD_FILE: MSMg01no422_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:58 2005CHROMAT_FILE: MSMg01no422_i03.g1 PHD_FILE: MSMg01no422_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,811,064 - 23,811,296)(23,958,014 - 23,958,286)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCTCTAT
ATATTCCGAACTGGCCTCAAACTCACAGAGATCTACCCATTACTATCTCC
TAAGTGCTAGGATTAAAGGAGTAAGCCAACATACCCTGCCTTTCAAGGTT
TCAAGGAATGTATCCCCCCTTTTTAAAGTTGTCAACTTTGTTTATAAACA
TTTTCAGTAATACTGTCTTATATACCTTTGGCAGCTGTAGACTCAGTAAT
GGCACTCCTGTTTCTATGATAGATTGTTCCTTATCTCTTTATCTTTGTGA
TTCTTGTTACTGTTTTTTTTTTAGACTCTTTGTTTTCAAATCTTGGGGCT
GTTTAGTTAATTGATTTTCTGGGTTTGTTTTTTGTTTTTCCTACTTAATT
CCATTTATTTCTGTTCTTGGTTTTCCCTTTTCCTGTTGATGCTTTGAGTT
TAATTTTTGTTTACTTTTGAAAATAGAGTATCTGTTATGTATTCTTTGAT
GATGTGCGCTAACACTGAATCTTGATTCTATGCTCCCTAACTGTGCTCCC
TTGCTCCTTGAAAGAACCCCAAACTCCTTCTGCCTACTTTGCTAGGGTAT
TCCAGCAAGTTTGTATTCCTCCCCCCCTGAGGACTCCCTTACTGACCCAA
CCTGGCACTTGCTTTTTGAAATGCCAATTGAACTGCTCTACTTGATTGTT
CGGTACCGTATTCATAAATTCCCTCTGTATTTN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGCAGAAATATCATTACTCCACTAGTAGAACTGGGGAATTATCTA
AGATTCACCATGTTGCTGGCTTTCAAACAATGAAGATGGTAAGTCAGGAG
CTATCAGTGCAAGGCTTCCTAACAGGAGAGCCAGTAGACATGTAATGTGC
AGCTTCATAAATACTGTCTCAGGCTGTGCATGGCATGAAACAACTGCTCT
CTGTCGCAAAATGGTGTTGCTGGGGATCAAACTCAGAGTCTAAATGCGTG
CTAGTCAAGGTCCCTACCTCNGTAGCTACATCTCCAACCCCAGGAGCAGG
TGAACCATAGTCCTAAGAATAAAGGAATCCATTTACATTAAGCAAAAAAC
AGGATCCTTCCTCTTTGTTTCTTTCTTTCTGACTGGCTGAGCTGGGGGTG
GGGCAGGGAAATGCCTTTGTTTGATTGATTGATTGTTAGTTGTAGGGAGA
CACACACTGGCACAGTGAACCAAAAACCAACACTTGATGGTTGTAGCTAC
ATCAGTCACACTGTGCCCGGGGGAGGAAGAGTGGCCTGAAGTGATGTTGT
CATGCCTACCATATTTTATGACCAGCTTCAGTTAAGGTAAAATTTAGGGT
GTGAACCCCCTGATCTTTGCAAGAATGCCTACATGTTTCATGTCCCCTGA
AAATCAAAACCCATGGGAGGAATGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_i03.b1 MSMg01no422_i03.b1 CHROMAT_FILE:
MSMg01no422_i03.b1 PHD_FILE: MSMg01no422_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:58 2005
         (233 letters)



>mm_chr11_23810864_23811496
          Length = 633

 Score =  404 bits (209), Expect = e-117
 Identities = 227/233 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcaaactcacagagatctacccattactatctcctaagtgctaggattaaaggagtaa 60
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 201 cctcaaactcacagagatctacccattactatctcctgagtgctaggattaaaggaataa 260

                                                                       
Query: 61  gccaacataccctgcctttcaaggtttcaaggaatgtatcccccctttttaaagttgtca 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccaacataccctgcctttcaagttttcaaggaatgtatcccccctttttaaagttgtca 320

                                                                       
Query: 121 actttgtttataaacattttcagtaatactgtcttatatacctttggcagctgtagactc 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttgtttataaacattctcagtaatactgtcttatatacctttggcagctgtagactc 380

                                                                
Query: 181 agtaatggcactcctgtttctatgatagattgttccttatctctttatctttg 233
           ||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 381 agtaatggcactcctgtttctatgataaagtgttccttatctctttatctttg 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no422_i03.g1 MSMg01no422_i03.g1 CHROMAT_FILE:
MSMg01no422_i03.g1 PHD_FILE: MSMg01no422_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:58 2005
         (273 letters)



>mm_chr11_23957814_23958486
          Length = 673

 Score =  528 bits (273), Expect = e-154
 Identities = 273/273 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctacatctccaaccccaggagcaggtgaaccatagtcctaagaataaaggaatccattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gctacatctccaaccccaggagcaggtgaaccatagtcctaagaataaaggaatccattt 414

                                                                       
Query: 61  acattaagcaaaaaacaggatccttcctctttgtttctttctttctgactggctgagctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 acattaagcaaaaaacaggatccttcctctttgtttctttctttctgactggctgagctg 354

                                                                       
Query: 121 ggggtggggcagggaaatgcctttgtttgattgattgattgttagttgtagggagacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggggtggggcagggaaatgcctttgtttgattgattgattgttagttgtagggagacaca 294

                                                                       
Query: 181 cactggcacagtgaaccaaaaaccaacacttgatggttgtagctacatcagtcacactgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cactggcacagtgaaccaaaaaccaacacttgatggttgtagctacatcagtcacactgt 234

                                            
Query: 241 gcccgggggaggaagagtggcctgaagtgatgt 273
           |||||||||||||||||||||||||||||||||
Sbjct: 233 gcccgggggaggaagagtggcctgaagtgatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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