BAC Information

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BAC

Clone NameMSMg01-423E08
Chromosome11 (Build37)
Map Location 17,838,008 - 17,838,472
singlet/doubletsinglet
Overlap genenone
Upstream gene2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748
Downstream geneEtaa1, LOC327871, LOC627696, LOC627716, LOC665796, Meis1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423E08.T7 (MSMg01no423_e08.b1)MSMg01-423E08.TJ (MSMg01no423_e08.g1)
ACCAG517466AG517467
length741751
length of high quality
(start - end)
473 (29 - 501)249 (58 - 306)
definitionCHROMAT_FILE: MSMg01no423_e08.b1 PHD_FILE: MSMg01no423_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:55 2005CHROMAT_FILE: MSMg01no423_e08.g1 PHD_FILE: MSMg01no423_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CGGGCGCTAAACGACTCACTATCCCAGAGGATCCGCGGAATTCTTTTATT
CATCCTGCCCATCCTTTTACACTTGGCCTGGTGAGTCTGTTTTTTTGTTT
TTTGGTTTTTTTTTTTGAAATTTATACCTGACCATCCTCACTGAAATTGA
TACTAAGTGACTTGTGTTATCTTTCTAAGGAAACATAAAAACACTTCTGG
ATAGTGGAGATGTGCTGGTCCAGCAGGCTACCCCTCTCTGCCTTTCATAC
CACTCTGCTATCCTCATTCTTTAGTGTCTTTGGAAGGACTAGTATGCAAA
GGGTTATTTAGTTTGCATGAGTTGGCACTTTTCCTGTCTCCCTGGGATGT
TGTGTAGTGGGTTGGCTTGATGCTGCTTATATTCTTATGCTAATATTGAG
CCCCATGACATGGTTGTCCCAGAGGAGATAATCTGTATGTAAACCTAGGT
GATACTGTGACCTTGCCCTTAAGTTATTTTTGATTTGTAAATAAAGATGA
CAACAGCCAGTAGTAGGGCAGAATAGACATAGGGGGGCTTTAGGGCTCCT
GCGCTTGGGGCTGGAAAAAAATCACTAAACGGTAAAAAATTTTTTTGACT
AGCCTAACACTCCGGCTTTACCCATTTTATATAACCTTTTTCTTATCTTC
TCTCCTTTGCCCCAAATTATCTCCCCCCCCCTCCCTTTTTACCACTTTTT
TCCCCTTCTTTCACTTTTTATACTGTTCGCTCTTTTCCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
CTGCAAAATTCACTGGGCAGTCGAGGGTGACCTTAAACTCTTCCTTTTCT
GTTTTTATTTTTTAACATTAATTTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTTTAGAGGCATAGATGCATGATGCATGTGTGGAAGTCAAAGGCACCT
TGTGGAAGTCCTTTGTCTCCTTCACCATGTGAACTCTTATTATCAAATTC
AGGGTCTCAGGCTTAGCAGCAAGTGCCTTACTTGTTGAGCAATCTTGCTA
TCTATTCTTATTTTCTGAACTTTTAATTTTCCTGCCTCAGCTAGACTTTT
GTTCTACAGTATTTCAACAAACATAATAATTGTGGGTATATATGTGTGAT
ATTTCAATTCATCTATCTATCATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCTATCTTTTTTGAGAATAATGATTGTTAGACTC
TTGGAAGCATACGGAATTTACTTAGGTAAGACGAGTAACATCTAATATTC
TATACCATATTAACATAACAACAGCAGACCAACAACAATTACATATTTTG
AAAATACACGCCATACACCAACGCCTTCATTTATTTCCCCGCCATTCTTT
TTTATACTCCTTATCCATGCTCCAACAACACCTCTTAACACTTCGACCAC
TATCCCAAACACCTCTCTACAATCATAAATTTCCTTATTCTATTCGTACC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_e08.b1 MSMg01no423_e08.b1 CHROMAT_FILE:
MSMg01no423_e08.b1 PHD_FILE: MSMg01no423_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:55 2005
         (473 letters)



>mm_chr11_17837948_17838821
          Length = 874

 Score =  853 bits (441), Expect = 0.0
 Identities = 459/465 (98%), Gaps = 1/465 (0%)
 Strand = Plus / Minus

                                                                       
Query: 10  gaattctttt-attcatcctgcccatccttttacacttggcctggtgagtctgttttttt 68
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaattcttttaagtcatcctgcccatccttttacacttggcctggtgagtctgttttttt 466

                                                                       
Query: 69  gttttttggtttttttttttgaaatttatacctgaccatcctcactgaaattgatactaa 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gttttttggtttttttttttgaaatttatacctgaccatcctcactgaaattgatactaa 406

                                                                       
Query: 129 gtgacttgtgttatctttctaaggaaacataaaaacacttctggatagtggagatgtgct 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gtgacttgtgttatctttctaaggaaacataaaaacacttctggatagtggagatgtgct 346

                                                                       
Query: 189 ggtccagcaggctacccctctctgcctttcataccactctgctatcctcattctttagtg 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ggtccagcaggctacccctctctgcctttcataccactctgctatcctcattctttagtg 286

                                                                       
Query: 249 tctttggaaggactagtatgcaaagggttatttagtttgcatgagttggcacttttcctg 308
           |||||||||||||||||||||||||||  |  ||||||||||||||||||||||||||||
Sbjct: 285 tctttggaaggactagtatgcaaagggccacctagtttgcatgagttggcacttttcctg 226

                                                                       
Query: 309 tctccctgggatgttgtgtagtgggttggcttgatgctgcttatattcttatgctaatat 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tctccctgggatgttgtgtagtgggttggcttgatgctgcttatattcttatgctaatat 166

                                                                       
Query: 369 tgagccccatgacatggttgtcccagaggagataatctgtatgtaaacctaggtgatact 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tgagccccatgacatggttgtcccagaggagataatctgtatgtaaacctaggtgatact 106

                                                        
Query: 429 gtgaccttgcccttaagttatttttgatttgtaaataaagatgac 473
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gtgaccttgcccttaagttatttttgatttgtaaataaagatgac 61


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 874
Length adjustment: 10
Effective length of query: 463
Effective length of database: 864
Effective search space:   400032
Effective search space used:   400032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)