BAC Information

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BAC

Clone NameMSMg01-423E21
Chromosome11 (Build37)
Map Location 3,673,965 - 3,674,253
singlet/doubletsinglet
Overlap geneOsbp2
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900
Downstream geneLOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423E21.T7 (MSMg01no423_e21.b1)MSMg01-423E21.TJ (MSMg01no423_e21.g1)
ACCAG517492AG517493
length785751
length of high quality
(start - end)
435 (55 - 489)287 (57 - 343)
definitionCHROMAT_FILE: MSMg01no423_e21.b1 PHD_FILE: MSMg01no423_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:57 2005CHROMAT_FILE: MSMg01no423_e21.g1 PHD_FILE: MSMg01no423_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACGACTCACTATTTCGAGAGGATCCGCGGAATTCAAGTCCATTC
CGGCATATATGGATAGTTCTAGACCAGGCAAGGCTACATACATAGTGAGA
CCCTATCATAAGAAGAGAGAGGGGAGGAGAGATCTGGGAGGGGCAGCAGA
CACCTGATTACACAACCAGTTCCAGAACAGGTTGGGCTGTGAGACCCTGT
CTCAATCAATCAGTCAATCAATCAATCAATCAATTCCCCTTTATCTTCTC
AAATTATACAAATCACTCTATTATAGTGTTATTTGACATACAAACTGTAT
TATTATAATAAAGTAAAACAGTTCATTGTCTTTTTTTTTGTTTTGTTTTG
TTTTTGTTTTTGTTTTTGTTTTTTGAGACAGGGTTCTTCTGTGTAGCCCT
GGCTGTCCTGGAACTCACTCTGTAGACCAGGGGGCCTTGAACTCAGAAAT
CCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAAGCGTGTGCCACCAC
ACCCAGCACAGTTAATTGTTTTAAGGGTCAGCTCTTTAATCTCGCCTTTA
AGTAAGATGGAAAGCTAGTGACACATATTCCCCTGGCCTCCACACACATT
TCATACTTCCCACTGATGCCCACCTTCCATTTTACATGTGGGGGCTCGTT
CCCACACACAACACTTCTCCATTTCCTTTCTCTATTTACTTCTGGTTCAC
TTCTTTTGGAAATACTCCTTATTCCTTCCTCGGCTATATTTTCACATTTT
CTTCTTCAATCATTTCTACCTTCCTCTTCCACTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGCCTAGAGAGGCCAGCCATCTTTTAGTAGAGGAAGGCAAGCTT
CAGCTTTCAGAGGCTGCAAAAGAGAAGTAAATCCCCTTTCCCTACCACCT
CCTTCTCCTCTCCCTAGACACCCGAGGTTCAGTCATCGGCTTCCAGGGTG
AGGATCTTGCCCATGCACCTCAGAGTTAGGAGGTTCACTCAGGCAGATGT
GTTCTGCAGTGGATACTGACCAGGCAGTGTGTGTGTGTGTGTGTGTGTGT
GTGTTTGTGTGTGTTCGTGTTCCCGGCACGGAGAGGGGGTTTTAAACTCC
AGTGGTGGCTGTCACAGGAAAAGCCCTCTCCATCCTGCCTGTGCCTCTGA
GTAAGCAGTCTGAGGTCACTCTGGGATACTACCCAGCTAGAGTAGCCTTA
GGCCCTCCTCAGCCCTTAATACTGTCCCCCTCTCGCCTTGCGCCTTCTTC
TAAGGTGTATTTGTGCCTAAACCTTATGCGTTATTTTTGCCTTCGTTTCT
TCTTAAATCTTTCCCCTTTCCTTCATTTGTTTACGACCACATGTATTGCG
ATTTCTTTCGATTCCCCCTTCCTGTGTCCTTTGTCTTTTTTTTTTTTTTT
TCTTTCCTTATACCTTTTTTTCTTTTTACTTTTTCTACTCCCTCTTCCTC
CTTTCCCTCCCCTTTTTTTCTTCCCTGTTCTTTCTTTCTCCCTTTTCTTC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_e21.g1 MSMg01no423_e21.g1 CHROMAT_FILE:
MSMg01no423_e21.g1 PHD_FILE: MSMg01no423_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:57 2005
         (287 letters)



>mm_chr11_3673834_3674520
          Length = 687

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%), Gaps = 2/289 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcctagagaggccagccatcttttagtagaggaaggcaagcttcagctttcagaggctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agcctagagaggccagccatcttttagtagaggaaggcaagcttcagctttcagaggctg 361

                                                                       
Query: 61  caaaagagaagtaaatcccctttccctaccacctccttctcctctccctagacacccgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 caaaagagaagtaaatcccctttccctaccacctccttctcctctccctagacacccgag 301

                                                                       
Query: 121 gttcagtcatcggcttccagggtgaggatcttgcccatgcacctcagagttaggaggttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gttcagtcatcggcttccagggtgaggatcttgcccatgcacctcagagttaggaggttc 241

                                                                       
Query: 181 actcaggcagatgtgttctgcagtggatactgaccaggcagtgtgtgtgtgtgtgtgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 actcaggcagatgtgttctgcagtggatactgaccaggcagtgtgtgtgtgtgtgtgtgt 181

                                                            
Query: 241 gtgtgtgt-t-tgtgtgtgttcgtgttcccggcacggagagggggtttt 287
           |||||||| | |||||||||||||||||||||||| |||||||||||||
Sbjct: 180 gtgtgtgtgtgtgtgtgtgttcgtgttcccggcacagagagggggtttt 132


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)