BAC Information

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BAC

Clone NameMSMg01-423F05
Chromosome11 (Build37)
Map Location 68,080,402 - 68,080,897
singlet/doubletsinglet
Overlap geneNtn1
Upstream geneMyh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8
Downstream genePik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423F05.T7 (MSMg01no423_f05.b1)MSMg01-423F05.TJ (MSMg01no423_f05.g1)
ACCAG517508AG517509
length757744
length of high quality
(start - end)
519 (36 - 554)496 (65 - 560)
definitionCHROMAT_FILE: MSMg01no423_f05.b1 PHD_FILE: MSMg01no423_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:59 2005CHROMAT_FILE: MSMg01no423_f05.g1 PHD_FILE: MSMg01no423_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTAT
TTTCTCCTCTCTGAAACCTTCTCCAGGGTTGCTCACAGTGTTCAATTTAC
AGCAGCTTAGGCTTTTCATAACATCCTCCAAAAAACTCCTCCTTGTCTAT
ACTCATTGTCCAGTTTCAGAGCTGTTTCAAGTTGATCAAGTGTTCATAAA
TCACTTTTAACTTATTTTTATGCATTAAAAATAGAATAGGTAATTTAATT
GGGGGCACTTGACACCAAGCCTGACAACCTGAGCTTGATCCCTGGGTTCC
ACATCATGGTAGGACAGAGCTGACTCTCAGAGATCATCCTCAGTGTCAGA
GGCACACATATGTTACACAAGTATAACATACCTTATACAGGTGAAGTAAT
TACATACATAAAATAAATCTAAAAACTTAAAATTAAAAAGATAAAAAATT
GCACTCTGATCTCCATATGCACACTGTGAGCATGGGTATGCCCCCTCACA
TCACACACACACACACACACACACACACACACACACACACACACACACAC
ACATGTAAGCACACGCACATGCACCCAGTGCACACTGAATAAACACCCAA
CCCAATCAAACCAATAAACCAAAAAACCAGTNNAGAAATGCTTGAGGGAA
TTTATTATTATTCACCGGTGTTTTCCACAAACTCCTTGGGACCCCATTAA
AATGGCCGCCCCCTTTTTTGGGCAGGGACTATATACAATCCTACCCGCAA
AAAATGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATTGCAAGATGCCTGAGCAACCTTGGCCATCTCTGG
TCTGTTCCTTCTCTTGCTTGCTCCACAACCTCCTTTGGGGAATTTGAGAA
GGAATGAGTGTTTGCACGCTCCTTTGTGGTCAACACATATTCTACCTTGT
ACAACCTCTAAGCAGGGGACAGGGTGTCCATCAGGCTGGGCACACAAGCA
AGAGGTATGGGGATATAGGAAGCCTTTGGCCCGCCCTTGTTTTATCTGAA
GATGCTAGGCCCTATCTGTCTCTATTGACCCTTCTTCCTTTCCTGACCTT
GAAGCAGCTAGAGGTCAGTTGACCCACAGGTCCTCAGAACCCTCCCTACC
TCTCTGCATATCTGTATATACAGCCCAGTCTTGCTCAAAGCCCAGAACGA
TGTGCCCCTGTCCTAGTTAAGTTTCTAGTGCTGGAATGAATACCATGAAC
CAAAGCAACTTGGGGAAGTCTTTCATTCTACAGCTTACAGTCCTTATGAA
GGGAAGTCAGGGCAGAAACTCCAGTAGGGCAGGAATCTGGAGCAGAGACT
GAAGTAGAAAGCATGGAGTAGCGCTGTCTACTAGCTTGCTCTCCATGGCT
TGCTCAGCTTGCTTTTTGATACACCCTGGACCACTGGGCAGTTCTGGGAC
CCTCCAATGGGACTCCCCTTCCCCTTCAGAAAGAAAATGTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_f05.g1 MSMg01no423_f05.g1 CHROMAT_FILE:
MSMg01no423_f05.g1 PHD_FILE: MSMg01no423_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:59 2005
         (496 letters)



>mm_chr11_68080304_68081199
          Length = 896

 Score =  959 bits (496), Expect = 0.0
 Identities = 496/496 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgcaagatgcctgagcaaccttggccatctctggtctgttccttctcttgcttgctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 attgcaagatgcctgagcaaccttggccatctctggtctgttccttctcttgcttgctcc 535

                                                                       
Query: 61  acaacctcctttggggaatttgagaaggaatgagtgtttgcacgctcctttgtggtcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 acaacctcctttggggaatttgagaaggaatgagtgtttgcacgctcctttgtggtcaac 475

                                                                       
Query: 121 acatattctaccttgtacaacctctaagcaggggacagggtgtccatcaggctgggcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 acatattctaccttgtacaacctctaagcaggggacagggtgtccatcaggctgggcaca 415

                                                                       
Query: 181 caagcaagaggtatggggatataggaagcctttggcccgcccttgttttatctgaagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 caagcaagaggtatggggatataggaagcctttggcccgcccttgttttatctgaagatg 355

                                                                       
Query: 241 ctaggccctatctgtctctattgacccttcttcctttcctgaccttgaagcagctagagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctaggccctatctgtctctattgacccttcttcctttcctgaccttgaagcagctagagg 295

                                                                       
Query: 301 tcagttgacccacaggtcctcagaaccctccctacctctctgcatatctgtatatacagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tcagttgacccacaggtcctcagaaccctccctacctctctgcatatctgtatatacagc 235

                                                                       
Query: 361 ccagtcttgctcaaagcccagaacgatgtgcccctgtcctagttaagtttctagtgctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ccagtcttgctcaaagcccagaacgatgtgcccctgtcctagttaagtttctagtgctgg 175

                                                                       
Query: 421 aatgaataccatgaaccaaagcaacttggggaagtctttcattctacagcttacagtcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 aatgaataccatgaaccaaagcaacttggggaagtctttcattctacagcttacagtcct 115

                           
Query: 481 tatgaagggaagtcag 496
           ||||||||||||||||
Sbjct: 114 tatgaagggaagtcag 99


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)