BAC Information

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BAC

Clone NameMSMg01-423G10
Chromosome11 (Build37)
Map Location 56,246,653 - 56,246,893
singlet/doubletsinglet
Overlap genenone
Upstream geneAtox1, G3bp, Glra1, Nmur2, LOC100040816
Downstream geneLOC624168, Gria1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423G10.T7 (MSMg01no423_g10.b1)MSMg01-423G10.TJ (MSMg01no423_g10.g1)
ACCAG517566AG517567
length753748
length of high quality
(start - end)
250 (54 - 303)242 (64 - 305)
definitionCHROMAT_FILE: MSMg01no423_g10.b1 PHD_FILE: MSMg01no423_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:04 2005CHROMAT_FILE: MSMg01no423_g10.g1 PHD_FILE: MSMg01no423_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGTCTT
TCCTCTCCTCTGCTCTCCCCTAGCTACCAGTGATCTTGGGAGATGCTGAC
ATATATAAGAAGATTAACTGAGAGAGGGACTCCATGATGCAGCTCTCAGG
AGGCCACCATCCTTGATGGGATGGGGTTGAGTGATGCAGATATACGGGGA
CGAGTGACCCCCTGACCCATGCCTTGTAAGGAAGTCCAGAAAACTCCTTG
ATTCACCAGATTGGACTTTGATAGAATTGTTACTTTGGTTTGTCATTGAT
GCTTTATGTTTTCAGTAGACATTTGTTCACATCTACCCAGGAAGTTAACA
CCATCCACCACATCCAGATATTAAGACATTGCCCCTAGTGACCCCCATTA
GCTGTGGATAACACTAAGATGCAGAGAAGTTAGTGGGCTGGCCATAGTCC
CATGACGCTCTGTACTATAAGTTTCTTTCTAGTTTACGCTCTTTTCCTCC
CAGGGTATTTAATGTTATGTTGATTGGTTGACCTTGTTATCACCTCCCTC
TCTATCATTGTCTACCTCTTCCTTGTATTTTGGTTTTTTGTTTTCCTCCC
CCTTAGCTTCCCCCCTTTATACTCTTTTTAAGCACCCTTTTTGTTTTCTT
TCTCTTCTTTCCCCCCTTTCTTATGCCCCCCCCCAGCCCACTTTTCTCTC
TTTTTTTCCCCCTTTTTTTTCCGCTTATTCCTCTTTCACCCCTTCTTTCC
CTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAATAACACAGCCTGTGTAGGAATGTGGAAGGTTTTT
CAATAATGTCTGGGAATGCATAGAATCCAATGCCTTAAAAAGCACATACA
GGGGCTCAGTCAACTCTCAGAGTGCTGAACTAAGTAGCAGAGAAGGAAGA
GGACTAAGCTTTAATGATCTTTAAAGGGTTACTAGCAAGGAAACTTTGGA
TAGAAGTATATATCCAATGTGTGTCTGTTTTTTATGATATTGCATTGAAT
TTCTTCATATTACTAGATTTAACATCCTTGGTGTTTTGGTTGGCTTTAGT
TGTCACCTTGACATACACTAGAGTCATCTGAGGAAAGCCTAGATTTAACA
ATTGCCTTGCCTTTCTCCAAGTTCCATGTATTAGTTTTATATTCTACTTT
CTTGCGCTTAACATTATGTCTTAGAAACTTGTTCTTTTCTAATTAGAGAC
ATATATAGAGCAGATCTAACTGGGAGGAGAGGTGGGGAGGAACCGTCAGG
CAATACACCACCCTTATCTTCCCCCACCCCATCGCGGTCTTTTTTTATTA
TTCACCTCTCTTTTTTTTCCCCCCCCTCTTCATACCCCTTTTTTTTCTCT
CTCTTTCTTCCCTCCGTGGCCCCCCTCCGTTCCCTTGTTTATCACCTCTT
CTTCCCCCTCGTTTTTCCCCTTTCTTTCTCCCTTTTCTTCCTACTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_g10.g1 MSMg01no423_g10.g1 CHROMAT_FILE:
MSMg01no423_g10.g1 PHD_FILE: MSMg01no423_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:04 2005
         (242 letters)



>mm_chr11_56246453_56247095
          Length = 643

 Score =  435 bits (225), Expect = e-126
 Identities = 237/241 (98%), Gaps = 1/241 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaataacacagcctgtgtaggaatgtggaaggtttttcaataatgtctgggaatgcatag 60
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 201 aaataacacagcctgtgtaggaatgtggaaggtttttcaataatgtcttggaatgcatgg 260

                                                                       
Query: 61  aatccaatgccttaaaaagcacatacaggggctcagtcaactctcagagtgctgaactaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatccaatgccttaaaaagcacatacaggggctcagtcaactctcagagtgctgaactaa 320

                                                                       
Query: 121 gtagcagagaaggaagaggactaagctttaatgatctttaaagggttactagcaaggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagcagagaaggaagaggactaagctttaatgatctttaaagggttactagcaaggaaa 380

                                                                       
Query: 181 ctttggatagaagtatatatccaatgtgtgtctgtttttt-atgatattgcattgaattt 239
           ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 ctttggatataagtatatatccaatgtgtgtctgtttttttatgatattgcattgaattt 440

            
Query: 240 c 240
           |
Sbjct: 441 c 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 643
Length adjustment: 9
Effective length of query: 233
Effective length of database: 634
Effective search space:   147722
Effective search space used:   147722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)