Query= MSMg01no423_k04.b1 MSMg01no423_k04.b1 CHROMAT_FILE:
MSMg01no423_k04.b1 PHD_FILE: MSMg01no423_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:22 2005
(417 letters)
>mm_chr11_44796708_44797524
Length = 817
Score = 673 bits (348), Expect = 0.0
Identities = 403/438 (92%), Gaps = 31/438 (7%)
Strand = Plus / Minus
Query: 1 ccttgtctgaag---aaaaaaaaaacacttggaaagtgaagaatacaccgaccatcacct 57
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ccttgtctgaagaaaaaaaaaaaaacacttggaaagtgaagaatacaccgaccatcacct 694
Query: 58 tttgtccttcataggtaacgtgtacatgtgta-----------ac-cacaaacacacaca 105
|||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct: 693 tttgtccttcataggtaacgtgtacatgtgtaatcacacacacacacacacacacacaca 634
Query: 106 cacacacacacac--acacacacacacacacacacacctttcttccacatacatacatac 163
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cacacacacacacatacacacacacacacacacacacctttcttccacatacatacatac 574
Query: 164 atacatacacacatacatacatacacacatacatacatatatttatacttacctacacct 223
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 at--------acatacatacatacacacatacatacatatatttatacttacctacacct 522
Query: 224 atggctaccctacagaatactttggtccattaacttgttaatcaccttaaaaagcaatac 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atggctaccctacagaatactttggtccattaacttgttaatcaccttaaaaagcaatac 462
Query: 284 aatttaaattctaaaatctgtgtccatttgcataataaaaccattaaatattttttaaat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aatttaaattctaaaatctgtgtccatttgcataataaaaccattaaatattttttaaat 402
Query: 344 ttctctctctctttctctctttctctctctct------ctctgtgtgtgtgtgtgtgtgt 397
|||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||
Sbjct: 401 ttctctctctctttctctctctctctctctctttctctctctgtgtgagtgtgtgtgtgt 342
Query: 398 gtgtgtgtgagtgtgtgt 415
||||||||| ||||||||
Sbjct: 341 gtgtgtgtgtgtgtgtgt 324
Score = 68.4 bits (35), Expect = 8e-16
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 379 tgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgt 417
|||||||||||||||||||||||||||| ||||||||||
Sbjct: 620 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 658
Score = 66.5 bits (34), Expect = 3e-15
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 92 cacaaacacacacacacacacacacacacacacacacacaca 133
|||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 319 cacatacacacacacacacacacacacacacacactcacaca 360
Score = 66.5 bits (34), Expect = 3e-15
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 98 cacacacacacacacacacacacacacacacacacacacaca 139
|||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 319 cacatacacacacacacacacacacacacacacactcacaca 360
Score = 66.5 bits (34), Expect = 3e-15
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 379 tgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtg 416
|||||||||||||||||||||||||||| |||||||||
Sbjct: 622 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 659
Score = 64.5 bits (33), Expect = 1e-14
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 100 cacacacacacacacacacacacacacacacacacacacac 140
|||| |||||||||||||||||||||||||||||| |||||
Sbjct: 319 cacatacacacacacacacacacacacacacacactcacac 359
Score = 56.8 bits (29), Expect = 3e-12
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 379 tgtgtgtgtgtgtgtgtgtgtgtgtgtga 407
|||||||||||||||||||||||||||||
Sbjct: 632 tgtgtgtgtgtgtgtgtgtgtgtgtgtga 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 164
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 10
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no423_k04.g1 MSMg01no423_k04.g1 CHROMAT_FILE:
MSMg01no423_k04.g1 PHD_FILE: MSMg01no423_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:22 2005
(440 letters)
>mm_chr11_44725223_44726062
Length = 840
Score = 835 bits (432), Expect = 0.0
Identities = 438/440 (99%)
Strand = Plus / Plus
Query: 1 cttcaattctgaaacaatgagtagcagttggcttgcctgccggttgtcttaacactggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcaattctgaaacaatgagtagcagttggcttgcctgccggttgtcttaacactggga 260
Query: 61 gaggtaccacaggcaattaaagtcaggctttgtgggatctggtgttttacttggaaagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtaccacaggcaattaaagtcaggctttgtgggatctggtgttttacttggaaagac 320
Query: 121 aacttgctcccatgaaacaaattagagagttgcataacatttatataatctagtactaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 aacttgctcccatgaaacaaattagagagttgcataacatttatataatctagtattaaa 380
Query: 181 tttgtggcttacaattcatggcaaggttctagaagacagaggggacagaggcataagaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtggcttacaattcatggcaaggttctagaagacagaggggacagaggcataagaag 440
Query: 241 gagatggttcgaaaactaatcaagtcccagttatatttggatggttctgtggtggatatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagatggttcgaaaactaatcaagtcccagttatatttggatggttctgtggtggatatt 500
Query: 301 ttaggctgtcacgatccttttattcaatcacagaaataacaaggaggaggcactctaagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaggctgtcacgatccttttattcaatcacagaaataacaaggaggaggcactctaagg 560
Query: 361 tacttaattggcctattttgtttgtttgttttgttttgagtgtaaccttaagattggtgg 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 tacttaattggcctattttgtttgtttgttttgttttgagtgtaaccttaggattggtgg 620
Query: 421 gcagtggtgagggtgggggt 440
||||||||||||||||||||
Sbjct: 621 gcagtggtgagggtgggggt 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
