Query= MSMg01no423_k14.b1 MSMg01no423_k14.b1 CHROMAT_FILE:
MSMg01no423_k14.b1 PHD_FILE: MSMg01no423_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:23 2005
(537 letters)
>mm_chr11_7985743_7986679
Length = 937
Score = 969 bits (501), Expect = 0.0
Identities = 521/537 (97%), Gaps = 15/537 (2%)
Strand = Plus / Minus
Query: 1 attttttccttacatgaatcccaaggcttgctttgtctgctctctaagattggatacact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 attttttccttacatgaatcccaaggcttgctttgtctgctctctaagattggatacact 667
Query: 61 tccaatcccaaggtaaagagcctctctgcccaagctcatgcatcttctatcacaatcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tccaatcccaaggtaaagagcctctctgcccaagctcatgcatcttctatcacaatcttt 607
Query: 121 taaaaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaacca 180
|||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 taaa---------------aaaccaaaccaaaccaaaccaaaccaaaccaaaccaaacca 562
Query: 181 aaccaaatcaaacccaacccatgttcagcagagatgtgcttgctttcctctgattctgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaccaaatcaaacccaacccatgttcagcagagatgtgcttgctttcctctgattctgtg 502
Query: 241 gcatggaatgatagcacaagatgattcatttttataattacctcaatatggaatttataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatggaatgatagcacaagatgattcatttttataattacctcaatatggaatttataa 442
Query: 301 tcacctcctgacctaactaagaaaaggttcccattgatactaatgattactggatagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcacctcctgacctaactaagaaaaggttcccattgatactaatgattactggatagaag 382
Query: 361 gaggatctatttctagcctttggaagaagcatcagattgctttctgctatgactgggttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggatctatttctagcctttggaagaagcatcagattgctttctgctatgactgggttg 322
Query: 421 cttttactccaacctgcaatgaatgaggcttccagagtgtcggcatctttagccaaccct 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 cttttactccaacctgcaatgaatgaggcttccagagtgtcagcatctttagccaaccct 262
Query: 481 ttaagaaaagttattatgactatcctagtaactacaaaatgtcatatttcccaaagg 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaagaaaagttattatgactatcctagtaactacaaaatgtcatatttcccaaagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 13
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no423_k14.g1 MSMg01no423_k14.g1 CHROMAT_FILE:
MSMg01no423_k14.g1 PHD_FILE: MSMg01no423_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:24 2005
(505 letters)
>mm_chr11_7832083_7832990
Length = 908
Score = 932 bits (482), Expect = 0.0
Identities = 503/516 (97%), Gaps = 11/516 (2%)
Strand = Plus / Plus
Query: 1 cagtacattaggagatatacagaattactgtacatagaagaatggacagtattcgcatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtacattaggagatatacagaattactgtacatagaagaatggacagtattcgcatta 260
Query: 61 ggatcatgattggtataggattggcaaagtatttcaaacatacaatggtgacactttaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ggatcatgattggtataggattggcaaagtatttcaaacatacaatggtgatactttaga 320
Query: 121 gattttgactttggtttaagtagtcataaaaaatgttttaaagcatgcatttatcattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattttgactttggtttaagtagtcataaaaaatgttttaaagcatgcatttatcattta 380
Query: 181 gaggacagaagtagggaaaagaagggatcagaataggatacctaatgagtgggtgttgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggacagaagtagggaaaagaagggatcagaataggatacctaatgagtgggtgttgta 440
Query: 241 ggcctggtattgtagatagcctgagtccagaggtcaggagagtaatgagaaatatttcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcctggtattgtagatagcctgagtccagaggtcaggagagtaatgagaaatatttcta 500
Query: 301 ctaccaaggagcacagtcctttttagtgcaatgttacatgaattgctcgt---acaatgg 357
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 ctaccaaggaacacagtcctttttagtgcaatgttacatgaattgctcgtggtacaatgg 560
Query: 358 aggtcatattttgtagttgaggcggtgacaataggttaggcaacttgcttttgactttac 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtcatattttgtagttgaggcggtgacaataggttaggcaacttgcttttgactttac 620
Query: 418 tgaaacagac--------caaagagaagaggagcagagtgcgggtcagaatcagtttgaa 469
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaaacagacaagtagaccaaagagaagaggagcagagtgcgggtcagaatcagtttgaa 680
Query: 470 gaactatctgttcctctagctgcatcctgccttgca 505
||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaactatctgttcctctagctgcatcctgccttgca 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 908
Length adjustment: 10
Effective length of query: 495
Effective length of database: 898
Effective search space: 444510
Effective search space used: 444510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
