Query= MSMg01no424_a04.b1 MSMg01no424_a04.b1 CHROMAT_FILE:
MSMg01no424_a04.b1 PHD_FILE: MSMg01no424_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:50 2005
(583 letters)
>mm_chr11_50954178_50955162
Length = 985
Score = 818 bits (423), Expect = 0.0
Identities = 537/581 (92%), Gaps = 13/581 (2%)
Strand = Plus / Plus
Query: 5 gaattcagctaatttttaag-tacaaatacaacataaaaataaattatgttcctaaagaa 63
||||||| |||| ||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattcaactaaattttaagatacaaatacaacagaaaaataaattatgttcctaaagaa 264
Query: 64 aaccacgaggaaaggaaaggattccactgacaatagtaataaaataaatacaacacgtaa 123
||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| |||
Sbjct: 265 aaccatgaggaaaggaaagtattccactgataatagtaataaaataaatacaacacataa 324
Query: 124 gaagaaacttaactaaggaaatcaaagggccctacattgaacacctaaaatcttgta-at 182
|||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| |
Sbjct: 325 gaagaaccttaactaaggaaatcaaagagccctacattgaacatctaaaatcttgtactt 384
Query: 183 ttgtttagcttttagcatgacaatctctaaagaaaaggaatttttaatgtttgccatatt 242
||||||||||||||||| ||| ||| |||||||||| ||||||||||||||||||||||
Sbjct: 385 ttgtttagcttttagcacaacagtctgtaaagaaaagcaatttttaatgtttgccatatt 444
Query: 243 tccttagcttatccaaatgctcttgtagttcaggattctttgttaaaaaataaattattg 302
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 tccttagcttatacaaatgctcttggagttcaggattctttgttaaaaaataaattattg 504
Query: 303 ggtaggaaaggtggttcagcagttttcatcgctcttgcaaaggacccacataaaggtccc 362
||||| ||||||||||||||||||||| || |||||||||||||||||||||||| ||||
Sbjct: 505 ggtagcaaaggtggttcagcagttttcgtcactcttgcaaaggacccacataaagttccc 564
Query: 363 agcacccacatggcagctcacagccatgagcagctccagttccagaggatctgacacctt 422
||||||||||||||||||||||||| |||||| ||| ||||||||| |||||||||||||
Sbjct: 565 agcacccacatggcagctcacagccgtgagcaactctagttccagaagatctgacacctt 624
Query: 423 cttctggcctctgtgggcaccaggaatgttccatggacacacatataggcaaacactcac 482
|||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||
Sbjct: 625 cttctggcctctgtgggcaccaggtatgttccatggacacacatttaagcaaacactcac 684
Query: 483 atgcatacattgtttttttaaaaaa---aaagctaaagtatttgtcacagtttatagaag 539
||||||||||| |||||| ||||||||||||||||||||||||||| ||||
Sbjct: 685 atgcatacatt--------aaaaaataaaaagctaaagtatttgtcacagtttatggaag 736
Query: 540 attaaatgtctcactcaagaaaatgcatttaagatccacat 580
||||||||| |||||||||||||||||||||||||||||||
Sbjct: 737 attaaatgtttcactcaagaaaatgcatttaagatccacat 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 985
Length adjustment: 10
Effective length of query: 573
Effective length of database: 975
Effective search space: 558675
Effective search space used: 558675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_a04.g1 MSMg01no424_a04.g1 CHROMAT_FILE:
MSMg01no424_a04.g1 PHD_FILE: MSMg01no424_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:51 2005
(256 letters)
>mm_chr11_51848436_51849091
Length = 656
Score = 480 bits (248), Expect = e-140
Identities = 254/256 (99%)
Strand = Plus / Plus
Query: 1 ctgaaaaggtagccttgaaaagagtaacagaaaccaattgtagttattagaagcaaccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaaaaggtagccttgaaaagagtaacagaaaccaattgtagttattagaagcaaccag 260
Query: 61 gagctgtcagtgttgctcagagcttatctgtactccattcagaagctctcgtgcatagct 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctgtcagtgttgcttagagcttatctgtactccattcagaagctctcgtgcatagct 320
Query: 121 gagactgagacaacactagtctgaacacatcttggtgagttaacatcagaattaagaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagactgagacaacactagtctgaacacatcttggtgagttaacatcagaattaagaaaa 380
Query: 181 tgcttgagctggtgagatgattcagtgcataaggatgctgccaggtggaagacccgaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 tgcttgagctggtgagatgattcagtgcataaggatgctgccaggtggaagacccaaggt 440
Query: 241 ctagctctagaacgca 256
||||||||||||||||
Sbjct: 441 ctagctctagaacgca 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space: 159809
Effective search space used: 159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
