BAC Information

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BAC

Clone NameMSMg01-424D10
Chromosome11 (Build37)
Map Location 79,571,406 - 79,571,919
singlet/doubletsinglet
Overlap genenone
Upstream gene1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185
Downstream geneLOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424D10.T7 (MSMg01no424_d10.b1)MSMg01-424D10.TJ (MSMg01no424_d10.g1)
ACCAG518187AG518188
length739744
length of high quality
(start - end)
514 (71 - 584)442 (80 - 521)
definitionCHROMAT_FILE: MSMg01no424_d10.b1 PHD_FILE: MSMg01no424_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:06 2005CHROMAT_FILE: MSMg01no424_d10.g1 PHD_FILE: MSMg01no424_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTGTTTTCCAAAGACTCTGACCAAAGTTGGGAAGCAGCCTAC
AGCCCATGGAGCCTGCAGGAACTTCGGCCTGCAAGGGTTTTTGCTTGTGA
GCTGTTTTTGTTTCTTCATCTCCCAGGCCATGAATTTGATTTTCCGAATC
AAATTCGGGAGGTAGGTTTTTAACATTCCAATTTGTGTACTGTTTTAAAT
CTTAGAACACTTTTTGTTTTTCTGACCATCTCACTCTGTAACCCTATCTG
GCCTGGAATTTGTGGTTTTCCTGCCTCAGTCTTCTGTGCACTGGGATCAT
AAGTATGCACTGGCATGCCTGGCATCAGACAGCATCTTTGTGTGACAGAT
CTCACATATCCTAGGCTACCTTGAAACTGGCTATGTGGCAAAAAGCGGCC
TTGAATTTGACAACTCTGCCTCCAAGTGTTAAGCTAGGCCTGACTTCAGA
GATCTTTTAATACTCTCATTGTATCTCCTCAAAAACTTCCTTTCCATTTT
TTTGTTATAACTTTATTGTATGATTAAATTTCCATCAGCTCATTGAGAGA
TCTGTTGGATTAGGAGAAGAGTTTCTGGGCCAGTGAAGTGGCTTTGTGGG
TAAAACGCCGGCAGGCCAAGCCTGGCATCAGATATGGAGCTGGAAAGATG
TGTCAGGGTTAACACAGTCACTTACAAAGGCCTCAGCTC
NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGGTTAAGAAATCCTGTC
TCGTGCTCGCTTCGGCAGCACATATACTAAAATTGGAACGATACAGAGAA
GATTAGCATGGCCCCTGCGCAAGGATGACACGCAAATTCGTGAAGCGTTC
CATATTTTTTATTTTATTGAAAGGACGCAGATGTAGCTGTCTCTTGTGAG
ACTATGCCGGGGCCCAGCAAACACAGAAGTGGATGCTCACAGTCAGGTAA
TGGATGGATCATAGGGCTCCCTTTTTTTTAGCTAGAGAAAGTAGCCAAGG
AGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAGCTAACC
AGTACCCCGGAGCTCTTGACTCTAGCTGCATATATATCAAAAGATGGCCT
AGTCGGCCATCACTGGAAAGAGAGGCCCATGGGACTTGCAAACTTTATAT
GCCCCAGTACAGGGGAACACCAGGGCCAAAAAGGTGGAGTGGGTGTTTAG
GGGAGTGGGGGCGCCTATTTCTTTCTTCCCTCTTTCTCTTAACTTCTGTT
TCCCTTTCTATCATTTTCTCTCCCTTTTCTTCTTTCCTCCTACCTCCTTT
CTCTTCTTTTTTTTTCCCCCTCTTCTCTTTTTTTTTTTTCCTCCTTTCCT
TTTTCTCTCTTCTTCTTCTTTTTCTTCCTTTTTTCTTCTCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_d10.b1 MSMg01no424_d10.b1 CHROMAT_FILE:
MSMg01no424_d10.b1 PHD_FILE: MSMg01no424_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:06 2005
         (514 letters)



>mm_chr11_79571206_79572119
          Length = 914

 Score =  978 bits (506), Expect = 0.0
 Identities = 512/514 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gactctgaccaaagttgggaagcagcctacagcccatggagcctgcaggaacttcggcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gactctgaccaaagttgggaagcagcctacagcccatggagcctgcaggaacttcggcct 260

                                                                       
Query: 61  gcaagggtttttgcttgtgagctgtttttgtttcttcatctcccaggccatgaatttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaagggtttttgcttgtgagctgtttttgtttcttcatctcccaggccatgaatttgat 320

                                                                       
Query: 121 tttccgaatcaaattcgggaggtaggtttttaacattccaatttgtgtactgttttaaat 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccgaatcaaattctggaggtaggtttttaacattccaatttgtgtactgttttaaat 380

                                                                       
Query: 181 cttagaacactttttgtttttctgaccatctcactctgtaaccctatctggcctggaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttagaacactttttgtttttctgaccatctcactctgtaaccctatctggcctggaatt 440

                                                                       
Query: 241 tgtggttttcctgcctcagtcttctgtgcactgggatcataagtatgcactggcatgcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtggttttcctgcctcagtcttctgtgcactgggatcataagtatgcactggcatgcct 500

                                                                       
Query: 301 ggcatcagacagcatctttgtgtgacagatctcacatatcctaggctaccttgaaactgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcatcagacagcatctttgtgtgacagatctcacatatcctaggctaccttgaaactgg 560

                                                                       
Query: 361 ctatgtggcaaaaagcggccttgaatttgacaactctgcctccaagtgttaagctaggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctatgtggcaaaaagcggccttgaatttgacaactctgcctccaagtgttaagctaggcc 620

                                                                       
Query: 421 tgacttcagagatcttttaatactctcattgtatctcctcaaaaacttcctttccatttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgacttcagagatcttttaatactctcattgtatctcctcaaaaacttcctttccatttt 680

                                             
Query: 481 tttgttataactttattgtatgattaaatttcca 514
           ||||||||||||||||||||| ||||||||||||
Sbjct: 681 tttgttataactttattgtataattaaatttcca 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)