BAC Information

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BAC

Clone NameMSMg01-424D13
Chromosome11 (Build37)
Map Location 100,577,254 - 100,577,499
singlet/doubletsinglet
Overlap geneRab5c
Upstream geneLOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9
Downstream geneLOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424D13.T7 (MSMg01no424_d13.b1)MSMg01-424D13.TJ (MSMg01no424_d13.g1)
ACCAG518193AG518194
length740725
length of high quality
(start - end)		246 (66 - 311)49 (73 - 121)
definitionCHROMAT_FILE: MSMg01no424_d13.b1 PHD_FILE: MSMg01no424_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:07 2005CHROMAT_FILE: MSMg01no424_d13.g1 PHD_FILE: MSMg01no424_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGATTGCCACTTCCCCTGCCCCCAGTGGTGGCCCGAGTTGTTAAG
TGCGATTGGTTAGAGTAGATTCCAGTCGGGTCATTGTGGTGGAGGAGTGG
GGGCAGTGGCAGGTAAGGGGGCTCAGTTGCTGCAGCACTGGCTCCGGCTG
GCTGGGTTGCTCTCCTGCAGATCCACACCTCTGGTTCGGCCCGGAGCCCC
GGCCGCATTCTGGGGCTCATTCTTGGGAAGCTTCTTAGCTGTTAGGGAGA
GAAGGGGAAGTATTTTTTTAGGTCACCCTAACACTCTCCCCTACTCAGTG
ACAGCCAGAATACTGGAGGGCTTGTGTGCCAGGTATACTGTGTCCCTAGA
AACTGAAGCAGATAACTTGCCCAAAACCCGAGTGACAATCGGCATTGTCA
GGATTTGAACTCATAGACAGAACGATTCCTGAGGCTTATGAGCTAAAGTC
CTATGGGGTAAGATTTGTCTATGCACGGCTCTGACATGTGCTGGTAGAAT
AACACTTAGACTGGTCCATGTATTATAAAGCTTTGCACCTGGTAGTCATA
CTATTTTATCAGTTAGCTTTATTTAAAACATCTTTAATTTTATGTATTTG
AGCTCTCTGTCCTTGACTCACCTAAAATTGGATTGAATGATTGCGAAGCT
GGGGAAATTGAACTCTTGTATCTCTGTTATTAGCATTTGG

NCCCGATGAAGTGGGAGGCCTGGCGGCGCCTGGTTCAAAACTGAGGTGAA
CTATAGAAGTTTCAAAAAATTCCAGTCTGCTTTGAGTAGCTAATAAGACC
CTGTCTCAAAACAAAAACCACAAAAAAAAAAAAAAATTATATATATAAAA
ATAAAAGGCTAGGCAGGTCTGCTGGTATATGCTTGCAATTCAAGGATTTG
GGAGACACTGGCTGGAGGCCCACTACCAATTTAAGGCCAGGTATTCTGCT
TATCTAGCTGGAGACTACCTAGCAAAGCCCCGGTTCAAGAAAAAGTATTT
TCACAGAGACAGGATTTATGTTGCAAATTTGATCAAGGGAAGCCTGGGGG
TCATGGTTTCAGGCCATCTGGGACTATGTAGAGAACCCCATGTTAAAGAA
CCAAACCAGAACAAAACCACAGTAGCAGACAGTACAATCTGGACAGGATC
CAAGGAAAATGATTATTCAAAACCCCACCCAAGTTCTCATGGAACTGTAC
GCCTATTGGGGACCACAGCGCACACTGTTTGCATTATTCATCTAATGCTG
AATAGCGCATGTCTCAAGTCCTGATGCAAAAAAATCCGGTATTTGACCCT
GGAATCACCGCTCCTTGGTCAAAATCTAATCCTCTTTTCCGCCCGCCCCA
CTTTTTTTTTCCTCTATTCTCCTCTTGTCCCTTTCTTCCAATTTTCAATT
CCCTTTTTGTACACACCTATTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_d13.b1 MSMg01no424_d13.b1 CHROMAT_FILE:
MSMg01no424_d13.b1 PHD_FILE: MSMg01no424_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:07 2005
         (246 letters)



>mm_chr11_100577054_100577699
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcccctgcccccagtggtggcccgagttgttaagtgcgattggttagagtagattccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcccctgcccccagtggtggcccgagttgttaagtgcgattggttagagtagattccag 260

                                                                       
Query: 61  tcgggtcattgtggtggaggagtgggggcagtggcaggtaagggggctcagttgctgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcgggtcattgtggtggaggagtgggggcagtggcaggtaagggggctcagttgctgcag 320

                                                                       
Query: 121 cactggctccggctggctgggttgctctcctgcagatccacacctctggttcggcccgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactggctccggctggctgggttgctctcctgcagatccacacctctggttcggcccgga 380

                                                                       
Query: 181 gccccggccgcattctggggctcattcttgggaagcttcttagctgttagggagagaagg 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccccagccgcattctggggctcattcttgggaagcttcttagctgttagggagagaagg 440

                 
Query: 241 ggaagt 246
           ||||||
Sbjct: 441 ggaagt 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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